Automate ingest-to-phylogenetic workflow #13
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Add phylogenetic workflow config and rules for Nextstrain automation to deploy the rabies dataset. Copied files from zika: * https://github.com/nextstrain/zika/blob/334eebb2e162f35ec3cfe450eef145feafd44c0b/phylogenetic/build-configs/nextstrain-automation/config.yaml * https://github.com/nextstrain/zika/blob/334eebb2e162f35ec3cfe450eef145feafd44c0b/phylogenetic/build-configs/nextstrain-automation/deploy.smk
* https://github.com/nextstrain/zika/blob/334eebb2e162f35ec3cfe450eef145feafd44c0b/.github/workflows/phylogenetic.yaml Subsequence commits will modify this for rabies
* https://github.com/nextstrain/zika/blob/334eebb2e162f35ec3cfe450eef145feafd44c0b/.github/workflows/ingest-to-phylogenetic.yaml Subsequent commits will modify this for rabies
genehack
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Aug 26, 2024
joverlee521
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Aug 26, 2024
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Description of proposed changes
Add a GH Action to automate the
ingestandphylogeneticworkflows, set to run daily.Also add separate workflows to provide the option of running
ingestorphylogeneticindependently.Related issue(s)
Checklist