fix: Treat geolocation-rules.tsv and annotations.tsv as input files #28
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Description of proposed changes
This commit modifies the configurations and snakemake rules to treat geolocation-rules.tsv and annotations.tsv as input files instead of strings. This change addresses a warning message that occurs when using relative file paths starting with './'. The warning suggests omitting the './' to avoid redundancy and ensure consistent file matching in Snakemake.
Furthermore, by treating source-data/annotations.tsv as a file, it provides hints to snakemake modules to add a prefix, such as "ingest/source-data/", if necessary. This modification aligns with the changes made in the following pull request: nextstrain/dengue#10
Related issue(s)
Testing
Ran a manual check with: