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Modernize/cleanup 2 #3

Merged
merged 7 commits into from
May 29, 2024
Merged

Modernize/cleanup 2 #3

merged 7 commits into from
May 29, 2024

Commits on May 23, 2024

  1. Archive previous contents under _LEGACY [#2] 

    Once the repo modernization is complete, these files will be deleted;
for the moment this allows them to be easily accessed.
    @genehack
    genehack committed May 23, 2024
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  2. Strip out old README; scaffold new one [#2]

    @genehack
    genehack committed May 23, 2024
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  3. Add pre-commit-config.yaml and supporting files [#2] 

    Exclude the _LEGACY tree because there's no point in cleaning that
stuff up; leave a comment so I remember to go back and remove it when
`_LEGACY` goes away.
    @genehack
    genehack committed May 23, 2024
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  4. Pull ingest and phylogenetic workflows from guide repo [#2] 

    Also apply pre-commit cleanup
    @genehack
    genehack committed May 23, 2024
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  5. git subrepo clone (merge) https://github.com/nextstrain/ingest ingest… 

    …/vendored

subrepo:
  subdir:   "ingest/vendored"
  merged:   "5b74edc"
upstream:
  origin:   "https://github.com/nextstrain/ingest"
  branch:   "main"
  commit:   "5b74edc"
git-subrepo:
  version:  "0.4.6"
  origin:   "https://github.com/ingydotnet/git-subrepo/"
  commit:   "73a0129"
    @genehack
    genehack committed May 23, 2024
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Commits on May 24, 2024

  1. Update snakefmt pre-commit action [#2]

    @genehack
    genehack committed May 24, 2024
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Commits on May 29, 2024

  1. Sync with "standard" pre-commit-config [#2] 

    Remove unused configuration files
    @genehack
    genehack committed May 29, 2024
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