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Dev > Master for v2.0.0 #41
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Merge pull request #14 from nf-core/master
Add Zenodo DOI master -> dev
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Commits on May 5, 2023
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fix bug returning only one sequence from UMI cluster and filter UMI a…
…lignments to ignore empty alignments
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Commits on May 9, 2023
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add minimap and samtools for mini_align process
Julia Mir Pedrol committedMay 9, 2023 Configuration menu - View commit details
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remove mini_align as it's now performed by medaka_consensus
Julia Mir Pedrol committedMay 9, 2023 Configuration menu - View commit details
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Julia Mir Pedrol committed
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Commits on May 16, 2023
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Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
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Update workflows/crisprseq_screening.nf
Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
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Update workflows/crisprseq_screening.nf
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Commits on May 23, 2023
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Some tiny markdown errors I found while looking too long at this page for a certain website.
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Merge pull request #26 from nf-core/smaller-md-fixes
tiny markdown fixes
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Merge pull request #22 from LaurenceKuhl/master
Adding functional genomics
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Merge pull request #27 from mirpedrol/merge-workflows
Merge workflows targeted & screening
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Merge pull request #25 from mirpedrol/fix-module-warning
alias all includes of MINIMAP2_ALIGN
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Merge pull request #31 from LaurenceKuhl/master
change name of certain params for more clarity
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Merge pull request #33 from LaurenceKuhl/master
crisprcleanr output added in the main.nf and docs
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Update docs/output_screening.md
Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
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Merge pull request #30 from nf-core/screening
Add screening analysis
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Merge branch 'umi-clustering' of https://github.com/mirpedrol/crisprseq…
… into mirpedrol-umi-clustering
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Merge pull request #34 from mashehu/new-docs-structure
move sub-docs into subdirectories
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Merge branch 'new-docs-structure' of github.com:mashehu/crisprseq int…
…o new-docs-structure
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Merge pull request #36 from mashehu/new-docs-structure
fix image links
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Merge pull request #37 from LaurenceKuhl/master
Full screening config file for aws
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Merge pull request #39 from mashehu/change-tubemap-tag
use new github style of dark mode images
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Apply suggestions from code review
Co-authored-by: SusiJo <43847534+SusiJo@users.noreply.github.com>
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Merge branch 'dev' of https://github.com/nf-core/crisprseq into nf-co…
…re-template-merge-2.8
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Merge pull request #47 from LaurenceKuhl/master
Add mageck and crisprcleanr in the citations
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Merge pull request #45 from mirpedrol/reference-param
Add new parameters `--reference` and `--protospacer`
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Merge pull request #48 from mirpedrol/aws-fulltest-yml
Split AWS fulltests in two separate files
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Merge pull request #24 from mirpedrol/umi-clustering
Add UMI clustering
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Merge branch 'dev' of https://github.com/nf-core/crisprseq into nf-co…
…re-template-merge-2.8
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Merge pull request #21 from nf-core/nf-core-template-merge-2.8
Important! Template update for nf-core/tools v2.8
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Merge pull request #38 from mirpedrol/bump-2.0.0
bump version to 2.0.0 and update changelog
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Apply suggestions from code review
Co-authored-by: SusiJo <43847534+SusiJo@users.noreply.github.com>
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Merge pull request #50 from mirpedrol/fix-full-tests-tower
remove profile aws_tower
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Merge pull request #54 from mirpedrol/test
Run test_Targeted when using `-profile test`
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Merge pull request #55 from LaurenceKuhl/master
Add test_screening_full.config in the config file
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