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update malt/build module #17250

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update malt/build module

update malt/build module #17250

Triggered via pull request November 15, 2024 13:00
@LilyAnderssonLeeLilyAnderssonLee
synchronize #6994
LilyAnderssonLee:malt_update
Status Failure
Total duration 5m 17s
Artifacts –

test.yml

on: pull_request
nf-test-changes
30s
nf-test-changes
pytest-changes
8s
pytest-changes
prettier
30s
prettier
editorconfig
14s
editorconfig
pre-commit
39s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint-modules
Matrix: nf-core-lint-modules
Matrix: pytest
confirm-pass
2s
confirm-pass
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2 errors and 6 warnings
nf-test (modules/nf-core/malt/build, docker_self_hosted)
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
pytest-changes
The following actions use a deprecated Node.js version and will be forced to run on node20: mirpedrol/paths-filter@main. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
nf-test (modules/nf-core/malt/build, conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
nf-test (modules/nf-core/malt/build, conda)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
nf-test (modules/nf-core/malt/run, conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
nf-test (modules/nf-core/malt/run, conda)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.