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chore(deps): update dotnet monorepo to v9 (major) #5846

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Nov 15, 2024
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chore(deps): update dotnet monorepo to v9 (major) #5846

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chore(deps): update dotnet monorepo to v9
renovate[bot] Nov 15, 2024
a83fd34
build: Swap COPY for ADD
edmundmiller Nov 15, 2024
15f6da9
build: Bump container version
edmundmiller Nov 15, 2024
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6 changes: 3 additions & 3 deletions modules/nf-core/wittyer/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,12 +1,12 @@
FROM mcr.microsoft.com/dotnet/sdk:6.0@sha256:6df1177e48b55272316d08f19cb383483af82aca5cdc67a76c414bc200847624 as builder
FROM mcr.microsoft.com/dotnet/sdk:9.0@sha256:7d24e90a392e88eb56093e4eb325ff883ad609382a55d42f17fd557b997022ca as builder

ADD https://github.com/Illumina/witty.er.git#v0.5.2 /src
WORKDIR /src
COPY . /src
RUN cd Wittyer \
&& dotnet publish -f net6.0 -r linux-x64 -c Release -o /output \
&& chmod +x /output/Wittyer

FROM mcr.microsoft.com/dotnet/runtime:6.0@sha256:437cda84bdce26ce074d88b63abeec567c7226d73e8b911605077468e1d5c8d5
FROM mcr.microsoft.com/dotnet/runtime:9.0@sha256:1e5eb0ed94ca96a34a914456db80e48bd1bb7bc3e3c8eda5e2c3d89c153c3081

LABEL git_repository=https://git.illumina.com/DASTE/Ilmn.Das.App.Wittyer.git
WORKDIR /opt/Wittyer
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2 changes: 1 addition & 1 deletion modules/nf-core/wittyer/main.nf
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Expand Up @@ -2,7 +2,7 @@ process WITTYER {
tag "$meta.id"
label 'process_single'

container "nf-core/wittyer:0.5.2.0"
container "nf-core/modules/wittyer:4c55c27c711b558f"

// Exit if running this module with -profile conda / -profile mamba
if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
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