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yahs release update #6695

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merged 7 commits into from
Sep 27, 2024
Merged

yahs release update #6695

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aa18bf3
update yahs version and output options
yumisims Sep 26, 2024
d194e6c
update yahs version and output options
yumisims Sep 26, 2024
eb41846
Merge branch 'master' into master
yumisims Sep 26, 2024
a81a985
add correct datatype in nf-test, new version yahs would attempt scaff…
yumisims Sep 26, 2024
f54412b
Merge branch 'master' of https://github.com/yumisims/modules
yumisims Sep 26, 2024
b35388a
add samtools tag
yumisims Sep 26, 2024
396a427
Merge branch 'master' into master
yumisims Sep 26, 2024
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8 changes: 4 additions & 4 deletions modules/nf-core/yahs/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -4,17 +4,17 @@ process YAHS {

conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/yahs:1.2a.2--h7132678_0':
'biocontainers/yahs:1.2a.2--h7132678_0' }"
'https://depot.galaxyproject.org/singularity/yahs:1.2--he4a0461_1':
'biocontainers/yahs:1.2--he4a0461_1' }"

input:
tuple val(meta), path(hic_map)
path fasta
path fai

output:
tuple val(meta), path("*scaffolds_final.fa") , emit: scaffolds_fasta
tuple val(meta), path("*scaffolds_final.agp"), emit: scaffolds_agp
tuple val(meta), path("*scaffolds_final.fa") , emit: scaffolds_fasta, optional: true
tuple val(meta), path("*scaffolds_final.agp"), emit: scaffolds_agp, optional: true
tuple val(meta), path("*bin") , emit: binary
path "versions.yml" , emit: versions

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1 change: 1 addition & 0 deletions modules/nf-core/yahs/meta.yml
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Expand Up @@ -75,3 +75,4 @@ authors:
- "@ksenia-krasheninnikova"
maintainers:
- "@ksenia-krasheninnikova"
- "@yy5"
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