Cannot invoke method containsKey() on null object when "igenomes_ignore=true"

[mlorthiois]

Hi,

When I use the profile provide by my institution (Genouest), which set the parameter igenomes_ignore = true, I get this error :

Cannot invoke method containsKey() on null object

 -- Check script '/home/genouest/cnrs_umr6290/mlorthiois/.nextflow/assets/nf-core/nanoseq/main.nf' at line: 290 or see '.nextflow.log' file for more details

Solved by adding --igenomes_ignore false in my command line.

[drpatelh]

Ok. I can reproduce this locally. Let me see if I can find a fix.

[drpatelh]

This should be fixed now in #89 . Thanks for reporting @mlorthiois ! It may turn out that this was related to #77 so may be worth trying the dev branch after that PR has been merged.