disable docker.runOptions -u and -g to workaround container issue

nf-core · Jan 11, 2024 · e196431 · e196431
1 parent 99a2d80
commit e196431
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -154,7 +154,8 @@ profiles {
         shifter.enabled        = false
         charliecloud.enabled   = false
         apptainer.enabled      = false
-        docker.runOptions      = '-u $(id -u):$(id -g)'
+        // Disabled this to deal with libpysal temporary directory issue
+        // docker.runOptions      = '-u $(id -u):$(id -g)'
     }
     arm {
         docker.runOptions      = '-u $(id -u):$(id -g) --platform=linux/amd64'
@@ -271,7 +272,7 @@ manifest {
     description     = """Pipeline for analysis of Molecular Pixelation assays"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version = '1.1.0dev'
+    version         = '1.1.0dev'
     // TODO: Use zenodo DOI once available
     doi             = '10.1101/2023.06.05.543770'
 }