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Patch release 1.3.1 #108

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merged 4 commits into from
Jul 31, 2024
Merged

Patch release 1.3.1 #108

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aec3a66
Fix conda version tag to use pixelator 0.18.2
fbdtemme Jul 30, 2024
934e555
Bump version and update CHANGELOG
fbdtemme Jul 30, 2024
5e18511
Update release date in CHANGELOG
fbdtemme Jul 31, 2024
51d0486
Merge pull request #107 from nf-core/patch-1.3.1
fbdtemme Jul 31, 2024
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6 changes: 6 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,12 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [[1.3.1](https://github.com/nf-core/pixelator/releases/tag/1.3.1)] - 2024-07-31

### Enhancements & fixes

- [[PR #107](https://github.com/nf-core/pixelator/pull/107)] - Fix conda version tag to use pixelator 0.18.2

## [[1.3.0](https://github.com/nf-core/pixelator/releases/tag/1.3.0)] - 2024-07-17

### Enhancements & fixes
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2 changes: 1 addition & 1 deletion modules/local/pixelator/collect_metadata.nf
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Expand Up @@ -6,7 +6,7 @@ process PIXELATOR_COLLECT_METADATA {
label 'process_single'
cache false

conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/list_options.nf
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Expand Up @@ -2,7 +2,7 @@ process PIXELATOR_LIST_OPTIONS {
label 'process_single'


conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/single-cell/amplicon/main.nf
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Expand Up @@ -3,7 +3,7 @@ process PIXELATOR_AMPLICON {
label 'process_low'


conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/single-cell/analysis/main.nf
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Expand Up @@ -2,7 +2,7 @@ process PIXELATOR_ANALYSIS {
tag "$meta.id"
label 'process_medium'

conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/single-cell/annotate/main.nf
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Expand Up @@ -3,7 +3,7 @@ process PIXELATOR_ANNOTATE {
label 'process_high'


conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/single-cell/collapse/main.nf
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Expand Up @@ -2,7 +2,7 @@ process PIXELATOR_COLLAPSE {
tag "$meta.id"
label 'process_medium'

conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/single-cell/demux/main.nf
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Expand Up @@ -3,7 +3,7 @@ process PIXELATOR_DEMUX {
label 'process_medium'


conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/single-cell/graph/main.nf
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Expand Up @@ -3,7 +3,7 @@ process PIXELATOR_GRAPH {
label 'process_high'


conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/single-cell/layout/main.nf
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Expand Up @@ -3,7 +3,7 @@ process PIXELATOR_LAYOUT {
label 'process_medium'


conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/single-cell/qc/main.nf
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Expand Up @@ -3,7 +3,7 @@ process PIXELATOR_QC {
label 'process_medium'


conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion modules/local/pixelator/single-cell/report/main.nf
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Expand Up @@ -3,7 +3,7 @@ process PIXELATOR_REPORT {
label 'process_low'


conda "bioconda::pixelator=0.17.1"
conda "bioconda::pixelator=0.18.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/pixelator:0.18.2--pyhdfd78af_0' :
'biocontainers/pixelator:0.18.2--pyhdfd78af_0' }"
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -313,7 +313,7 @@ manifest {
description = """Pipeline for analysis of Molecular Pixelation assays"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '1.3.0'
version = '1.3.1'
doi = '10.1101/2023.06.05.543770'
}

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