This repository has been archived by the owner on Jun 13, 2024. It is now read-only.
Add deprecation notice #73
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: nf-core CI | |
| # This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| pull_request: | |
| release: | |
| types: [published] | |
| # Uncomment if we need an edge release of Nextflow again | |
| # env: NXF_EDGE: 1 | |
| jobs: | |
| test: | |
| name: Run workflow tests | |
| # Only run on push if this is the nf-core dev branch (merged PRs) | |
| if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/scflow') }} | |
| runs-on: ubuntu-latest | |
| env: | |
| NXF_VER: ${{ matrix.nxf_ver }} | |
| NXF_ANSI_LOG: false | |
| strategy: | |
| matrix: | |
| # Nextflow versions: check pipeline minimum and current latest | |
| nxf_ver: ['21.04.2', ''] | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@v2 | |
| - name: Install Nextflow | |
| env: | |
| CAPSULE_LOG: none | |
| run: | | |
| wget -qO- get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| - name: Run pipeline with test data | |
| run: | | |
| nextflow run ${GITHUB_WORKSPACE} -profile test,docker | |
| - name: Build new docker image | |
| if: ${{ github.event.workflow_run.conclusion == 'thiswillnevertrigger' }} | |
| run: docker build --no-cache . -t almurphy/scfdev:dev | |
| - name: Pull docker image | |
| if: ${{ github.event.workflow_run.conclusion == 'thiswillnevertrigger' }} | |
| run: | | |
| docker pull almurphy/scfdev:dev | |
| docker tag almurphy/scfdev:dev almurphy/scfdev:dev |