added patch command for subworkflows #6585

Job	Run time
Get test file matrix	5s
setup (3.8, ubuntu-latest)	1s
setup (3.11, ubuntu-latest)	3s
setup (3.8, ubuntu-20.04)	1s
Run test_utils.py with Python 3.8 on ubuntu-latest	1m 3s
Run test_test_utils.py with Python 3.8 on ubuntu-latest	58s
Run test_sync.py with Python 3.8 on ubuntu-latest	1m 8s
Run test_subworkflows.py with Python 3.8 on ubuntu-latest	6m 35s
Run test_schema.py with Python 3.8 on ubuntu-latest	1m 19s
Run test_refgenie.py with Python 3.8 on ubuntu-latest	1m 15s
Run test_params_file.py with Python 3.8 on ubuntu-latest	54s
Run test_modules.py with Python 3.8 on ubuntu-latest	5m 20s
Run test_list.py with Python 3.8 on ubuntu-latest	1m 4s
Run test_lint_utils.py with Python 3.8 on ubuntu-latest	52s
Run test_lint.py with Python 3.8 on ubuntu-latest	1m 51s
Run test_licenses.py with Python 3.8 on ubuntu-latest	51s
Run test_launch.py with Python 3.8 on ubuntu-latest	1m 12s
Run test_download.py with Python 3.8 on ubuntu-latest	3m 34s
Run test_create_logo.py with Python 3.8 on ubuntu-latest	58s
Run test_create.py with Python 3.8 on ubuntu-latest	1m 3s
Run test_components.py with Python 3.8 on ubuntu-latest	9m 48s
Run test_cli.py with Python 3.8 on ubuntu-latest	48s
Run test_bump_version.py with Python 3.8 on ubuntu-latest	1m 13s
coverage	0s
	41m 56s

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