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#46 New metadata graph #64

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merged 41 commits into from
Dec 12, 2023
Merged

#46 New metadata graph #64

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64c4d27
Update prototype for new metadata graph function(s)
omaus Nov 13, 2023
16c8442
Update prototype: missing, marking, aggregating
omaus Nov 14, 2023
f8541ab
Update prototype: topNodes, obsoleteTerms
omaus Nov 15, 2023
b90c856
Update prototype: better `isHeader`
omaus Nov 16, 2023
8a49fe2
Update prototype: partition/group/match terms
omaus Nov 17, 2023
27c5aeb
Update prototype: grouping, construction
omaus Nov 20, 2023
2577f60
Update prototype: TF deconstruction, relations
omaus Nov 21, 2023
1581357
Restructure playgrounds & prototypes in sln
omaus Nov 22, 2023
4dbcf11
Update prototype: more branching
omaus Nov 22, 2023
fa881fa
Add flowchart for prototype workflow
omaus Nov 23, 2023
f9a2837
Update prototype: working graph
omaus Nov 24, 2023
5618b40
Prototype: Finalize flowchart graph diagram
omaus Nov 27, 2023
9604978
Prototype: work around graph error(s)
omaus Nov 27, 2023
f26a9b5
Update working graph's visuals
omaus Nov 28, 2023
a58c944
Update prototype: addMissingTermsInGroup
omaus Nov 28, 2023
bb81ada
Update coloring in working graph
omaus Nov 29, 2023
12d6529
Update prototype: finalize missing group terms
omaus Nov 29, 2023
3f6340d
Add script files to sln file
omaus Dec 3, 2023
2c3d809
Add new cases to ARCRelation
omaus Dec 4, 2023
dc5ada4
Upate prototype: first finish graph constructor
omaus Dec 4, 2023
9ee242d
Update ARCGraph Viz functionality
omaus Dec 5, 2023
fca6b03
(WIP) Work on bugs in prototype
omaus Dec 5, 2023
b8e5c15
Update working graph and change its file directory
omaus Dec 6, 2023
816aa34
(WIP) Update prototype: Fix ontology graph bug
omaus Dec 6, 2023
56b0b06
Raise F#Aux dependency
omaus Dec 7, 2023
30a9afd
Update prototype: Fix ontology graph creation bugs
omaus Dec 7, 2023
3329967
Update CyGraph viz function
omaus Dec 8, 2023
ef20f76
Update working graph
omaus Dec 8, 2023
78f5686
(WIP) Update prototype: split function
omaus Dec 8, 2023
64a42f7
Update vis functions
omaus Dec 11, 2023
5aaa8f4
Update prototype: split graph functionality
omaus Dec 11, 2023
e3b7dc5
Update Graphoscope dependency
omaus Dec 11, 2023
bf4d60f
Add another ontology graph function
omaus Dec 11, 2023
61460ed
Add internal FGraph augmentations
omaus Dec 11, 2023
3de881c
Copy new metadata graph functionality from script to source file
omaus Dec 11, 2023
48fb9f9
Add release notes to solution file
omaus Dec 11, 2023
6cadf19
Fix build project in terms of release notes
omaus Dec 11, 2023
f034fe0
Add demo notebook(s) (to sln file)
omaus Dec 11, 2023
6c5010d
Comment out print statements
omaus Dec 11, 2023
8629d56
Update releasenotes for v0.0.1
omaus Dec 11, 2023
0dae683
Comment out final print command
omaus Dec 12, 2023
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45 changes: 41 additions & 4 deletions RELEASE_NOTES.md
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Original file line number Diff line number Diff line change
@@ -1,4 +1,41 @@
### 0.0.0 (Released 2023-5-8)
* Additions:
* Initial set up for RELEASE_Notes.md

### 0.0.1+6c5010d (Released 2023-12-11)
* Additions:
* [[#f034fe0](https://github.com/nfdi4plants/arc-validate/commit/f034fe0b6ff43dc02c050f5576283ee4ef8aa272)] Add demo notebook(s) (to sln file)
* [[#6c5010d](https://github.com/nfdi4plants/arc-validate/commit/6c5010dcabee7f22a8b4b3a57abc797831aa68af)] Comment out print statements
* [[#48fb9f9](https://github.com/nfdi4plants/arc-validate/commit/48fb9f9ee996d5724185298a597c023eb9b3ac26)] Add release notes to solution file
* [[#3de881c](https://github.com/nfdi4plants/arc-validate/commit/3de881cfb8d988f686eb26b861f740198053aacb)] Copy new metadata graph functionality from script to source file
* [[#61460ed](https://github.com/nfdi4plants/arc-validate/commit/61460ed2544e78e5bd3dac1055e4529259d3ff73)] Add internal FGraph augmentations
* [[#bf4d60f](https://github.com/nfdi4plants/arc-validate/commit/bf4d60ffedc5c0565e87f41d8ddc3076f4242b54)] Add another ontology graph function
* [[#e3b7dc5](https://github.com/nfdi4plants/arc-validate/commit/e3b7dc535e72d8b3fedaae204fa6f0918cf43fa3)] Update Graphoscope dependency
* [[#5aaa8f4](https://github.com/nfdi4plants/arc-validate/commit/5aaa8f4e6f995155abb38a85cdeff57bfe120fc8)] Update prototype: split graph functionality
* [[#64a42f7](https://github.com/nfdi4plants/arc-validate/commit/64a42f7dcc5ab11c7f2bedfe64b8d62e432ed274)] Update vis functions
* [[#78f5686](https://github.com/nfdi4plants/arc-validate/commit/78f56868354a12d80f21e662e1a67922d058e6a1)] (WIP) Update prototype: split function
* [[#ef20f76](https://github.com/nfdi4plants/arc-validate/commit/ef20f76c0a5fd568b39bd795cbc3076ca147467a)] Update working graph
* [[#3329967](https://github.com/nfdi4plants/arc-validate/commit/3329967802290004723cda5d3aed7a6b0a703149)] Update CyGraph viz function
* [[#56b0b06](https://github.com/nfdi4plants/arc-validate/commit/56b0b06c93bfbf1484455e4cdc36b0c593d70b00)] Raise F#Aux dependency
* [[#b8e5c15](https://github.com/nfdi4plants/arc-validate/commit/b8e5c1544c7e06903442d0eb8ef9483314e1104b)] Update working graph and change its file directory
* [[#9ee242d](https://github.com/nfdi4plants/arc-validate/commit/9ee242d1de406212f14a7676f16f489da351b884)] Update ARCGraph Viz functionality
* [[#dc5ada4](https://github.com/nfdi4plants/arc-validate/commit/dc5ada40994f0366112ee60e4815938f590f22b9)] Upate prototype: first finish graph constructor
* [[#2c3d809](https://github.com/nfdi4plants/arc-validate/commit/2c3d809df59bf907ee3c89b16acdf0466f838b23)] Add new cases to ARCRelation
* [[#3f6340d](https://github.com/nfdi4plants/arc-validate/commit/3f6340d55f7b5fbb6969b187e3c22493a68ede79)] Add script files to sln file
* [[#12d6529](https://github.com/nfdi4plants/arc-validate/commit/12d652906240171f2272cf376be7aa059c081822)] Update prototype: finalize missing group terms
* [[#bb81ada](https://github.com/nfdi4plants/arc-validate/commit/bb81adaaa485899b0bd6d0e2b3285002ec04d89d)] Update coloring in working graph
* [[#a58c944](https://github.com/nfdi4plants/arc-validate/commit/a58c94476098a77ee682e895abcda156fc548dc7)] Update prototype: addMissingTermsInGroup
* [[#f26a9b5](https://github.com/nfdi4plants/arc-validate/commit/f26a9b580d027c9ce37c2e1d0f54c386bbfe305b)] Update working graph's visuals
* [[#9604978](https://github.com/nfdi4plants/arc-validate/commit/96049785322a89a84655a7a71bc890dc9cea9ca3)] Prototype: work around graph error(s)
* [[#5618b40](https://github.com/nfdi4plants/arc-validate/commit/5618b403856b5a3e91820686ebdd74bf11e06129)] Prototype: Finalize flowchart graph diagram
* [[#f9a2837](https://github.com/nfdi4plants/arc-validate/commit/f9a283779ea0761d093a804c07b9b51167631144)] Update prototype: working graph
* [[#fa881fa](https://github.com/nfdi4plants/arc-validate/commit/fa881fa055b2a6bb8e9e944c88da38a73fe736f3)] Add flowchart for prototype workflow
* [[#4dbcf11](https://github.com/nfdi4plants/arc-validate/commit/4dbcf1191123940f1cd66cc90fc9a7f18bde12cc)] Update prototype: more branching
* [[#1581357](https://github.com/nfdi4plants/arc-validate/commit/1581357b3d76c72e7b07e7aef639451339738c94)] Restructure playgrounds & prototypes in sln
* [[#2577f60](https://github.com/nfdi4plants/arc-validate/commit/2577f60bbb659a4e5f3bf00712703940a616d8b7)] Update prototype: TF deconstruction, relations
* Bugfixes:
* [[#6cadf19](https://github.com/nfdi4plants/arc-validate/commit/6cadf19467518f3965237d48afa5c4ca16b732d3)] Fix build project in terms of release notes
* [[#30a9afd](https://github.com/nfdi4plants/arc-validate/commit/30a9afd0c7661d712c5ff1a84ba43e78e20ddd54)] Update prototype: Fix ontology graph creation bugs
* [[#816aa34](https://github.com/nfdi4plants/arc-validate/commit/816aa3407bc83086fa6887d030ea79211169c946)] (WIP) Update prototype: Fix ontology graph bug
* [[#fca6b03](https://github.com/nfdi4plants/arc-validate/commit/fca6b036b7c3c22a3b844a4ca5981ca5d7ad16cd)] (WIP) Work on bugs in prototype

### 0.0.0 (Released 2023-5-8)
* Additions:
* Initial set up for RELEASE_Notes.md

32 changes: 24 additions & 8 deletions arc-validate.sln
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@ Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "sln", "sln", "{B3F07465-210
ErrorClassOntology.obo = ErrorClassOntology.obo
global.json = global.json
README.md = README.md
RELEASE_NOTES.md = RELEASE_NOTES.md
TestOntology.obo = TestOntology.obo
EndProjectSection
EndProject
Expand Down Expand Up @@ -46,15 +47,15 @@ Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "playgrounds", "playgrounds"
ProjectSection(SolutionItems) = preProject
playgrounds\arc-validation-packages.fsx = playgrounds\arc-validation-packages.fsx
playgrounds\argu.fsx = playgrounds\argu.fsx
codeGeneratorScripting.fsx = codeGeneratorScripting.fsx
errorClassesStatic.fsx = errorClassesStatic.fsx
expectoPlayground.fsx = expectoPlayground.fsx
getAnnotationTableCvPs.fsx = getAnnotationTableCvPs.fsx
playgrounds\codeGeneratorScripting.fsx = playgrounds\codeGeneratorScripting.fsx
playgrounds\errorClassesStatic.fsx = playgrounds\errorClassesStatic.fsx
playgrounds\expectoPlayground.fsx = playgrounds\expectoPlayground.fsx
playgrounds\getAnnotationTableCvPs.fsx = playgrounds\getAnnotationTableCvPs.fsx
playgrounds\github-api.fsx = playgrounds\github-api.fsx
graphModelIOTest.fsx = graphModelIOTest.fsx
graphoscopePlayground.fsx = graphoscopePlayground.fsx
playground.fsx = playground.fsx
prototype.fsx = prototype.fsx
playgrounds\graphModelIOTest.fsx = playgrounds\graphModelIOTest.fsx
playgrounds\graphoscopePlayground.fsx = playgrounds\graphoscopePlayground.fsx
playgrounds\playground.fsx = playgrounds\playground.fsx
playgrounds\workingGraph.md = playgrounds\workingGraph.md
EndProjectSection
EndProject
Project("{6EC3EE1D-3C4E-46DD-8F32-0CC8E7565705}") = "ARCValidationPackages", "src\ARCValidationPackages\ARCValidationPackages.fsproj", "{CF14C74E-20D2-4EC9-B11E-357BFD1244CB}"
Expand All @@ -67,6 +68,19 @@ Project("{6EC3EE1D-3C4E-46DD-8F32-0CC8E7565705}") = "ARCExpect", "src\ARCExpect\
EndProject
Project("{6EC3EE1D-3C4E-46DD-8F32-0CC8E7565705}") = "ARCExpect.Tests", "tests\ARCExpect.Tests\ARCExpect.Tests.fsproj", "{46EA4BDB-095A-4369-AD7E-07E702CD3E38}"
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "arcGraph_prototypes", "arcGraph_prototypes", "{02699157-EFC4-4E1A-94CC-B9825E2D1CB8}"
ProjectSection(SolutionItems) = preProject
playgrounds\arcGraph_playgrounds\prototype_v0.1.0.fsx = playgrounds\arcGraph_playgrounds\prototype_v0.1.0.fsx
playgrounds\arcGraph_playgrounds\prototype_v0.1.1.fsx = playgrounds\arcGraph_playgrounds\prototype_v0.1.1.fsx
playgrounds\arcGraph_playgrounds\prototype_v0.2.0.fsx = playgrounds\arcGraph_playgrounds\prototype_v0.2.0.fsx
playgrounds\arcGraph_playgrounds\prototype_v0.2.1.fsx = playgrounds\arcGraph_playgrounds\prototype_v0.2.1.fsx
EndProjectSection
EndProject
Project("{2150E333-8FDC-42A3-9474-1A3956D46DE8}") = "demo_notebooks", "demo_notebooks", "{A83F65C9-925E-437C-A457-EF8B9C6B154D}"
ProjectSection(SolutionItems) = preProject
playgrounds\demo_notebooks\demo_ARCGraph.ipynb = playgrounds\demo_notebooks\demo_ARCGraph.ipynb
EndProjectSection
EndProject
Global
GlobalSection(SolutionConfigurationPlatforms) = preSolution
Debug|Any CPU = Debug|Any CPU
Expand Down Expand Up @@ -114,6 +128,8 @@ Global
{0DBD3705-F884-4D89-BBEC-B5BDC41905FD} = {5C204780-A94B-46A2-B768-B12C7D81DDFC}
{33E89EBC-A0FB-405D-9ED8-756B0CADBB28} = {6275F297-567B-421B-B055-4F88B2785765}
{46EA4BDB-095A-4369-AD7E-07E702CD3E38} = {5C204780-A94B-46A2-B768-B12C7D81DDFC}
{02699157-EFC4-4E1A-94CC-B9825E2D1CB8} = {7994D526-5B21-4EBD-9CCB-EFA04EE303CF}
{A83F65C9-925E-437C-A457-EF8B9C6B154D} = {B3F07465-2108-4C43-843A-9F503044FDB7}
EndGlobalSection
GlobalSection(ExtensibilityGlobals) = postSolution
SolutionGuid = {FF9C2722-38D9-48C4-8095-4726C56E92DE}
Expand Down
2 changes: 2 additions & 0 deletions build/Build.fs
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Original file line number Diff line number Diff line change
Expand Up @@ -41,6 +41,8 @@ let _preReleaseNoDocs =
"PreReleaseNoDocs"
[setPrereleaseTag; clean; build; runTests; packPrerelease; createPrereleaseTag; publishNugetPrerelease]

let _releaseNotes = ReleaseNotesTasks.updateReleaseNotes

[<EntryPoint>]
let main args =
runOrDefault build args
0 ErrorClassOntology.obo → playgrounds/ErrorClassOntology.obo
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0 TestOntology.obo → playgrounds/TestOntology.obo
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