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Increase tiling size (for czi files) in bf2raw #325

Merged
merged 1 commit into from
Sep 25, 2023
Merged

Increase tiling size (for czi files) in bf2raw #325

merged 1 commit into from
Sep 25, 2023

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annshress
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@annshress annshress commented Sep 25, 2023 •
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Addresses #324

Changes

  • Increased tiling size for czi to zarr conversion using bf2raw

This PR doesn't introduce any:

  • Binary files
  • Temporary files, auto-generated files
  • Secret keys
  • Local debugging print statements
  • Unwanted comments (e.g: # Gets user from environment for code os.environ['user'] )

This PR contains valid:

  • tests

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Coverage report

The coverage rate went from 64.77% to 64.77% ➡️
The branch rate is 47%.

None of the new lines are part of the tested code. Therefore, there is no coverage data about them.

Diff Coverage details (click to unfold)

em_workflows/czi/flow.py

100% of new lines are covered (39.79% of the complete file).

@philipmac philipmac merged commit 8e19bc6 into main Sep 25, 2023
2 checks passed
@philipmac philipmac deleted the feature/speed-czi-to-zarr branch September 25, 2023 19:41
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@philipmac philipmac philipmac approved these changes

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@annshress @philipmac