Add a --fs-reuse-base option to reuse existing freesurfer outputs from a longitudinal pipeline #990
Workflow file for this run
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| name: Pre-release checks | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| pre-release: | |
| # Check pre-releases of dependencies on stable Python | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: true | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.10', '3.11'] | |
| install: ['pip'] | |
| check: ['tests'] | |
| pip-flags: ['PRE_PIP_FLAGS'] | |
| env: | |
| INSTALL_TYPE: ${{ matrix.install }} | |
| CHECK_TYPE: ${{ matrix.check }} | |
| EXTRA_PIP_FLAGS: ${{ matrix.pip-flags }} | |
| OS_TYPE: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - name: Install dependencies | |
| run: .maint/ci/install_dependencies.sh | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Create virtual environment | |
| run: .maint/ci/create_venv.sh | |
| - name: Build archive | |
| run: | | |
| source .maint/ci/build_archive.sh | |
| echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV | |
| - name: Install fMRIPrep | |
| run: .maint/ci/install.sh | |
| - name: Install extras | |
| run: .maint/ci/install_extras.sh | |
| - name: Run tests | |
| run: .maint/ci/check.sh | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| file: coverage.xml | |
| if: ${{ always() }} |