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FIX: Connect bold_mask to bold_t2s_wf
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effigies committed Oct 15, 2023
1 parent 4564048 commit 55e275e
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1 change: 1 addition & 0 deletions fmriprep/workflows/bold/fit.py
Original file line number Diff line number Diff line change
Expand Up @@ -692,6 +692,7 @@ def init_bold_native_wf(
# Do NOT set motion_xfm or fieldmap_id on outputnode
# This prevents downstream resamplers from double-dipping
workflow.connect([

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(inputnode, bold_t2s_wf, [("bold_mask", "bold_mask")]),
(boldref_bold, join_echos, [("out_file", "bold_files")]),
(join_echos, bold_t2s_wf, [("bold_files", "inputnode.bold_file")]),
(join_echos, outputnode, [("bold_files", "bold_echos")]),
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