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ENH: Flexibilize "sophisticated" pepolar to allow monomodal execution #3393

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merged 3 commits into from
Nov 3, 2024

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oesteban
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@oesteban oesteban commented Nov 3, 2024

Changes proposed in this pull request

Documentation that should be reviewed

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codecov bot commented Nov 3, 2024

Codecov Report

Attention: Patch coverage is 0% with 1 line in your changes missing coverage. Please review.

Project coverage is 72.06%. Comparing base (2e4f921) to head (729b5b9).
Report is 4 commits behind head on master.

Files with missing lines Patch % Lines
fmriprep/workflows/base.py 0.00% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##           master    #3393   +/-   ##
=======================================
  Coverage   72.06%   72.06%           
=======================================
  Files          57       57           
  Lines        4231     4231           
  Branches      455      455           
=======================================
  Hits         3049     3049           
  Misses       1067     1067           
  Partials      115      115           

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@effigies
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effigies commented Nov 3, 2024

What use case is this intended to support?

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oesteban commented Nov 3, 2024

I have a dataset with all four AP/PA/LR/RL EPIs. This should be easy to handle by topup.

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effigies commented Nov 3, 2024

What about len(suffixes) >= 2, then? Or we could drop the length check altogether and rely on sdcflows to not create estimators with too few inputs.

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oesteban commented Nov 3, 2024

What about len(suffixes) >= 2, then? Or we could drop the length check altogether and rely on sdcflows to not create estimators with too few inputs.

The idea is that the four images are of the same modality while also allowing for epi + bold (which should be capture by the other condition, and disallow more than 2 images)

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effigies commented Nov 3, 2024

Got it. Let's add a comment, as I'm sure I'll forget.

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oesteban commented Nov 3, 2024 via email

@effigies effigies merged commit 08fecee into master Nov 3, 2024
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@effigies effigies deleted the fix/sdc-sophisticated-pepolar branch November 3, 2024 14:53
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2 participants