ENH: Add separate workflow to run with a single anatomical #656
Workflow file for this run
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| name: Pytest | |
| on: | |
| push: | |
| branches: [ '*' ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ master, 'maint/*' ] | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10'] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install nibabies | |
| run: | | |
| python -m venv /tmp/venv | |
| source /tmp/venv/bin/activate | |
| python -m pip install -U pip | |
| python -m pip install ".[test]" | |
| - name: Run Pytest | |
| run: | | |
| source /tmp/venv/bin/activate | |
| pytest -sv --doctest-modules --cov nibabies --cov-report xml nibabies | |
| - name: Submit coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: coverage.xml |