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rel(23.1.0rc1): update changes [skip ci]
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mgxd committed Nov 10, 2023
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Expand Up @@ -5,7 +5,7 @@ The next minor release of *NiBabies*, this release includes a number of new good
### New surface reconstruction option
M-CRIB-S (Adamson et al., https://www.nature.com/articles/s41598-020-61326-2), has shown to improve performance in participants under 9 months. If you would like to try this method, add the following to your command: `--surface-recon-method mcribs`.

Note: Currently, a pre-computed segmentation derivative must be provided to run mcribs.
Note: Currently, a T2w image and pre-computed segmentation derivative must be provided to run mcribs.

### Improved batch processing
*NiBabies* now automatically parses the BIDS directory for participant ages, first searching in the
Expand All @@ -14,6 +14,9 @@ participant's `session.tsv`, and falling back to `participants.tsv`. This simpli
### Goodvoxels projection
An option to determine and exclude high-variance voxels from being projected to the surface when creating CIFTI files. To enable this, add `--project-goodvoxels` to your command.

### Single anatomical processing
Running *NiBabies* is now less restrictive, and will still process data missing either a T1w / T2w image. However, for best results, it is recommended to collect and include both for processing.


## Full Changelog
* CI: Purge codecov python package (#282)
Expand All @@ -26,6 +29,8 @@ An option to determine and exclude high-variance voxels from being projected to
* ENH: Reorder anatomical processsing, run ANTs DenoiseImage on anatomicals (#286)
* ENH: Extract participant ages from BIDS sources, deprecate `--age-months` (#287)
* ENH: Dilate BOLD mask by 2 voxels to prevent over-aggressive masking degrading T2star map estimation (#296)
* ENH: Allow precomputed derivatives in T1w or T2w space (#305)
* ENH: Add separate workflow for single anatomical processing (#316)
* FIX: Improve free memory estimation (#284)
* FIX: Ensure age is extracted from sessions file (#291)
* FIX: Restore CIFTI medial wall masking, subcortical volume LAS reorientation (#298)
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