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ENH+RF: Allow precomputed derivatives in T1w or T2w space #305

Merged
merged 19 commits into from
Aug 30, 2023
Merged

ENH+RF: Allow precomputed derivatives in T1w or T2w space #305

merged 19 commits into from
Aug 30, 2023

Commits on Jul 25, 2023

  1. MAINT: Purge removed class

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    mgxd committed Jul 25, 2023
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Commits on Jul 31, 2023

  1. RF: Create dedicated container class for derivatives

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    mgxd committed Jul 31, 2023
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Commits on Aug 7, 2023

  1. RF: Ensure precomputed mask, aseg match anatomical template

    @mgxd
    mgxd committed Aug 7, 2023
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Commits on Aug 9, 2023

  1. RF: Clean up derivatives class, move validation over

    @mgxd
    mgxd committed Aug 9, 2023
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  2. FIX: Remove derivative processing from preproc workflow, do not regrid

    @mgxd
    mgxd committed Aug 9, 2023
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  3. ENH: Add new derivatives coregistration workflow, make probmask optio… 

    …n for t1-t2 coreg
    @mgxd
    mgxd committed Aug 9, 2023
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  4. ENH: Use dedicated Derivatives class

    @mgxd
    mgxd committed Aug 9, 2023
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  5. ENH: Support either T1w/T2w anatomical derivatives

    @mgxd
    mgxd committed Aug 9, 2023
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Commits on Aug 10, 2023

  1. ENH: Take in bids root to build reference path, add warnings

    @mgxd
    mgxd committed Aug 10, 2023
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  2. FIX: Correct Python path for patching

    @mgxd
    mgxd committed Aug 10, 2023
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  3. FIX: Derivative coregistration inconsistencies

    @mgxd
    mgxd committed Aug 10, 2023
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  4. FIX: Reverse transform

    @mgxd
    mgxd committed Aug 10, 2023
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Commits on Aug 14, 2023

  1. FIX: Add truth table logic to determine which derivatives should be used

    @mgxd
    mgxd committed Aug 14, 2023
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  2. MAINT: Improve logging

    @mgxd
    mgxd committed Aug 14, 2023
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Commits on Aug 15, 2023

  1. TST: Add test for Derivatives class, add some info to docstring

    @mgxd
    mgxd committed Aug 15, 2023
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  2. TST: Import future for annotations

    @mgxd
    mgxd committed Aug 15, 2023
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Commits on Aug 28, 2023

  1. FIX: Ensure T2w is passed into coreg workflow

    @mgxd
    mgxd committed Aug 28, 2023
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  2. FIX: Expect probmap input by default

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    mgxd committed Aug 28, 2023
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  3. FIX: Ensure mask input is used

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    mgxd committed Aug 28, 2023
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