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Replace resource_filename with load_data #345

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merged 2 commits into from
Feb 12, 2024
Merged

Replace resource_filename with load_data #345

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2c42ebd
Replace resource_filename with load_data.
tsalo Feb 12, 2024
6e06fff
Update alignment.py
tsalo Feb 12, 2024
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6 changes: 2 additions & 4 deletions nibabies/workflows/bold/alignment.py
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Original file line number Diff line number Diff line change
Expand Up @@ -61,9 +61,7 @@
# For now, define it and don't run it
# TODO: Move to TemplateFlow

# tpl_avgwmparc = resource_filename(
# 'nibabies', 'data/tpl-MNI152NLin6Asym_res-01_desc-avgwmparc_dseg.nii.gz'
# )
# tpl_avgwmparc = load_data("tpl-MNI152NLin6Asym_res-01_desc-avgwmparc_dseg.nii.gz")
# applywarp_tpl = pe.Node(
# fsl.ApplyWarp(in_file=tpl_avgwmparc, ref_file=tpl_rois, interp="nn"),
# name="applywarp_std"
Expand Down Expand Up @@ -141,7 +139,7 @@
)

# reuse saved atlas to atlas transform
atlas_xfm = resource_filename("nibabies", "data/MNIInfant_to_MNI1526NLinAsym.mat")
atlas_xfm = load_data("MNIInfant_to_MNI1526NLinAsym.mat")

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inputnode = pe.Node(
niu.IdentityInterface(fields=["MNIInfant_bold", "MNIInfant_rois", "MNI152_rois"]),
name="inputnode",
Expand Down
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