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Merge pull request #116 from oesteban/enh/prepare-topup
MAINT: Add FLIRT config files to prepare for TOPUP integration
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# Resolution (knot-spacing) of warps in mm | ||
--warpres=20,16,14,12,10,6,4,4,4 | ||
# Subsampling level (a value of 2 indicates that a 2x2x2 neighbourhood is collapsed to 1 voxel) | ||
--subsamp=2,2,2,2,2,1,1,1,1 | ||
# FWHM of gaussian smoothing | ||
--fwhm=8,6,4,3,3,2,1,0,0 | ||
# Maximum number of iterations | ||
--miter=5,5,5,5,5,10,10,20,20 | ||
# Relative weight of regularisation | ||
--lambda=0.005,0.001,0.0001,0.000015,0.000005,0.0000005,0.00000005,0.0000000005,0.00000000001 | ||
# If set to 1 lambda is multiplied by the current average squared difference | ||
--ssqlambda=1 | ||
# Regularisation model | ||
--regmod=bending_energy | ||
# If set to 1 movements are estimated along with the field | ||
--estmov=1,1,1,1,1,0,0,0,0 | ||
# 0=Levenberg-Marquardt, 1=Scaled Conjugate Gradient | ||
--minmet=0,0,0,0,0,1,1,1,1 | ||
# Quadratic or cubic splines | ||
--splineorder=3 | ||
# Precision for calculation and storage of Hessian | ||
--numprec=double | ||
# Linear or spline interpolation | ||
--interp=spline | ||
# If set to 1 the images are individually scaled to a common mean intensity | ||
--scale=1 |
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# Resolution (knot-spacing) of warps in mm | ||
--warpres=20,16,14,12,10,6,4,4,4 | ||
# Subsampling level (a value of 2 indicates that a 2x2x2 neighbourhood is collapsed to 1 voxel) | ||
--subsamp=1,1,1,1,1,1,1,1,1 | ||
# FWHM of gaussian smoothing | ||
--fwhm=8,6,4,3,3,2,1,0,0 | ||
# Maximum number of iterations | ||
--miter=5,5,5,5,5,10,10,20,20 | ||
# Relative weight of regularisation | ||
--lambda=0.0005,0.0001,0.00001,0.0000015,0.0000005,0.0000005,0.00000005,0.0000000005,0.00000000001 | ||
# If set to 1 lambda is multiplied by the current average squared difference | ||
--ssqlambda=1 | ||
# Regularisation model | ||
--regmod=bending_energy | ||
# If set to 1 movements are estimated along with the field | ||
--estmov=1,1,1,1,1,0,0,0,0 | ||
# 0=Levenberg-Marquardt, 1=Scaled Conjugate Gradient | ||
--minmet=0,0,0,0,0,1,1,1,1 | ||
# Quadratic or cubic splines | ||
--splineorder=3 | ||
# Precision for calculation and storage of Hessian | ||
--numprec=double | ||
# Linear or spline interpolation | ||
--interp=spline | ||
# If set to 1 the images are individually scaled to a common mean intensity | ||
--scale=1 |
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# Resolution (knot-spacing) of warps in mm | ||
--warpres=20,16,14,12,10,6,4,4,4 | ||
# Subsampling level (a value of 2 indicates that a 2x2x2 neighbourhood is collapsed to 1 voxel) | ||
--subsamp=2,2,2,2,2,1,1,1,1 | ||
# FWHM of gaussian smoothing | ||
--fwhm=8,6,4,3,3,2,1,0,0 | ||
# Maximum number of iterations | ||
--miter=5,5,5,5,5,10,10,20,20 | ||
# Relative weight of regularisation | ||
--lambda=0.005,0.001,0.0001,0.000015,0.000005,0.0000005,0.00000005,0.0000000005,0.00000000001 | ||
# If set to 1 lambda is multiplied by the current average squared difference | ||
--ssqlambda=1 | ||
# Regularisation model | ||
--regmod=bending_energy | ||
# If set to 1 movements are estimated along with the field | ||
--estmov=1,1,1,1,1,0,0,0,0 | ||
# 0=Levenberg-Marquardt, 1=Scaled Conjugate Gradient | ||
--minmet=0,0,0,0,0,1,1,1,1 | ||
# Quadratic or cubic splines | ||
--splineorder=3 | ||
# Precision for calculation and storage of Hessian | ||
--numprec=double | ||
# Linear or spline interpolation | ||
--interp=spline | ||
# If set to 1 the images are individually scaled to a common mean intensity | ||
--scale=1 |
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# Resolution (knot-spacing) of warps in mm | ||
--warpres=20,16,14,12,10,6,4,4,4 | ||
# Subsampling level (a value of 2 indicates that a 2x2x2 neighbourhood is collapsed to 1 voxel) | ||
--subsamp=4,4,2,2,2,1,1,1,1 | ||
# FWHM of gaussian smoothing | ||
--fwhm=8,6,4,3,3,2,1,0,0 | ||
# Maximum number of iterations | ||
--miter=5,5,5,5,5,10,10,20,20 | ||
# Relative weight of regularisation | ||
--lambda=0.035,0.006,0.0001,0.000015,0.000005,0.0000005,0.00000005,0.0000000005,0.00000000001 | ||
# If set to 1 lambda is multiplied by the current average squared difference | ||
--ssqlambda=1 | ||
# Regularisation model | ||
--regmod=bending_energy | ||
# If set to 1 movements are estimated along with the field | ||
--estmov=1,1,1,1,1,0,0,0,0 | ||
# 0=Levenberg-Marquardt, 1=Scaled Conjugate Gradient | ||
--minmet=0,0,0,0,0,1,1,1,1 | ||
# Quadratic or cubic splines | ||
--splineorder=3 | ||
# Precision for calculation and storage of Hessian | ||
--numprec=double | ||
# Linear or spline interpolation | ||
--interp=spline | ||
# If set to 1 the images are individually scaled to a common mean intensity | ||
--scale=1 |
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# Resolution (knot-spacing) of warps in mm | ||
--warpres=20,14,10 | ||
# Subsampling level (a value of 2 indicates that a 2x2x2 neighbourhood is collapsed to 1 voxel) | ||
--subsamp=2,2,2 | ||
# FWHM of gaussian smoothing | ||
--fwhm=8,2,1 | ||
# Maximum number of iterations | ||
--miter=5,5,5 | ||
# Relative weight of regularisation | ||
--lambda=0.005,0.000005,0.0000005 | ||
# If set to 1 lambda is multiplied by the current average squared difference | ||
--ssqlambda=1 | ||
# Regularisation model | ||
--regmod=bending_energy | ||
# If set to 1 movements are estimated along with the field | ||
--estmov=0,0,0 | ||
# 0=Levenberg-Marquardt, 1=Scaled Conjugate Gradient | ||
--minmet=0,0,1 | ||
# Quadratic or cubic splines | ||
--splineorder=3 | ||
# Precision for calculation and storage of Hessian | ||
--numprec=double | ||
# Linear or spline interpolation | ||
--interp=spline | ||
# If set to 1 the images are individually scaled to a common mean intensity | ||
--scale=1 |
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@@ -68,6 +68,7 @@ sdcflows = | |
data/*.json | ||
data/*.nii.gz | ||
data/*.mat | ||
data/flirtsch/*.cnf | ||
VERSION | ||
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[options.entry_points] | ||
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