ENH: Autogenerate B0FieldIdentifiers from IntendedFor
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@@ Coverage Diff @@
## dev/1.4.0 #142 +/- ##
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Coverage 93.65% 93.65%
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Files 18 18
Lines 1008 1040 +32
Branches 129 136 +7
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+ Hits 944 974 +30
- Misses 37 39 +2
Partials 27 27
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Dec 24, 2020
2.0.0rc4 * FIX: Convert SEI fieldmaps given in rad/s into Hz (#127) * FIX: Limit ``3dQwarp`` to maximum 4 CPUs for stability reasons (#128) * ENH: Generate a simple mask after correction (#161) * ENH: Increase unit-tests coverage of ``sdcflows.fieldmaps`` (#159) * ENH: Optimize tensor-product B-Spline kernel evaluation (#157) * ENH: Add a memory check to dynamically limit interpolation blocksize (#156) * ENH: Massage TOPUP's fieldcoeff files to be compatible with ours (#154) * ENH: Add a simplistic EPI masking algorithm (#152) * ENH: Utility that returns the ``B0FieldSource`` of a given potential EPI target (#151) * ENH: Write ``fmapid-`` entity in Derivatives (#150) * ENH: Multiplex fieldmap estimation outputs into a single ``outputnode`` (#149) * ENH: Putting the new API together on a base workflow (#143) * ENH: Autogenerate ``B0FieldIdentifiers`` from ``IntendedFor`` (#142) * ENH: Finalizing the API overhaul (#132) * ENH: Keep a registry of already-used identifiers (and auto-generate new) (#130) * ENH: New objects for better representation of fieldmap estimation (#114) * ENH: Show FieldmapReportlet oriented aligned with cardinal axes (#120) * ENH: New estimation API (featuring a TOPUP implementation!) (#115) * DOC: Minor improvements to the literate workflows descriptions. (#162) * DOC: Fix typo in docstring (#155) * DOC: Enable NiPype's sphinx-extension to better render Interfaces (#131) * MAINT: Drop Python 3.6 (#160) * MAINT: Enable Git-archive protocol with setuptools-scm-archive (#153) * MAINT: Migrate TravisCI -> GH Actions (completion) (#138) * MAINT: Migrate TravisCI -> GH Actions (#137) * MAINT: Minimal unit test and refactor of pepolar workflow node (#133) * MAINT: Collect code coverage from tests on Circle (#122) * MAINT: Test minimum dependencies with TravisCI (#96) * MAINT: Add FLIRT config files to prepare for TOPUP integration (#116)
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This PR:
EstimatorRegistryto easily check whether a file has already been included for some estimation method.epifiles withIntendedFormetadata to complete the estimation workflows that can automatically be set up.B0FieldIdentifier, should it be accepted by BIDS.Improvements to tests
This PR extends the test data available through the pytest fixture with
dsA(on the repo, empty files) andds000054from fMRIPrep. In addition, all testing data has been migrated to adatalad-osfsolution for easier maintenance and version tracking.