-
Notifications
You must be signed in to change notification settings - Fork 530
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
FIX: ANTs' utilities revision - bug fixes and add more operations to ants.ImageMath
#3236
Conversation
These added operations are necessary for the antsBrainExtraction workflow we have in niworkflows (and hence niflows too).
For the |
this commit requires nipy/nipype#3236 to be merged.
Codecov Report
@@ Coverage Diff @@
## master #3236 +/- ##
==========================================
- Coverage 65.00% 64.96% -0.05%
==========================================
Files 302 302
Lines 39929 39929
Branches 5279 5279
==========================================
- Hits 25956 25939 -17
- Misses 12913 12925 +12
- Partials 1060 1065 +5
Flags with carried forward coverage won't be shown. Click here to find out more.
Continue to review full report at Codecov.
|
ants.ImageMath
ants.ImageMath
6d59c93
to
db819a9
Compare
- Disable ``copy_header`` for the ``PadImage`` operation in ``ImageMath`` - Drop the CopyHeader mixin and update auto test of ResampleImageBySpacing
db819a9
to
e59aaa6
Compare
this commit requires nipy/nipype#3236 to be merged.
Looks reasonable. |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Some alternative suggestions. I prefer RST plain text to Python comments. Added some context about what copy_header
does.
1d95223
to
0fffcf7
Compare
0fffcf7
to
461bc5e
Compare
this commit requires nipy/nipype#3236 to be merged.
this commit requires nipy/nipype#3236 to be merged.
These revisions are necessary for the antsBrainExtraction workflow we have in niworkflows (and hence niflows too):
ImageMath
operations, overwriting the behavior ofcopy_header
if the operation isPadImage
(see comment below).copy_header
ofResampleImageBySpacing
as the original affine is not valid anymore in the output