Merge branch 'master' into dev

obophenotype · Jan 31, 2024 · 2e6c4ca · 2e6c4ca
2 parents fe43954 + 938a873
commit 2e6c4ca
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Showing 3 changed files with 3 additions and 8 deletions.
diff --git a/src/curation/upheno-config.yaml b/src/curation/upheno-config.yaml
@@ -242,7 +242,7 @@ sources:
       #- ncit
   - id: zp
     mirror_from: http://purl.obolibrary.org/obo/zp/zp-base.owl
-    root: http://purl.obolibrary.org/obo/ZP_00000000
+    root: http://purl.obolibrary.org/obo/ZP_0000000
     prefix_iri: http://purl.obolibrary.org/obo/ZP_
     taxon: http://purl.obolibrary.org/obo/UPHENO_ZP
     taxon_label: ZPO

diff --git a/src/ontology/upheno-odk.yaml b/src/ontology/upheno-odk.yaml
@@ -113,8 +113,6 @@ sources:
     mirror_from: http://purl.obolibrary.org/obo/xao.owl
   - id: zfa-uberon
     mirror_from: http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-zfa.owl
-  - id: bspo-uberon
-    mirror_from: https://raw.githubusercontent.com/obophenotype/uberon/master/bridge/uberon-bridge-to-bspo.obo
   - id: caro-uberon
     mirror_from: http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-caro.owl
   - id: xao-uberon
@@ -177,7 +175,6 @@ sources:
       - bfo
       - xao
       - xao-uberon
-      - bspo-uberon
       - caro-uberon
   - id: planp
     mirror_from: http://purl.obolibrary.org/obo/planp/planp-base.owl
@@ -190,12 +187,11 @@ sources:
     dependencies:
       - plana
       #- plana-uberon
-      - bspo-uberon
       - caro-uberon
       #- ncit
   - id: zp
     mirror_from: http://purl.obolibrary.org/obo/zp/zp-base.owl
-    root: http://purl.obolibrary.org/obo/ZP_00000000
+    root: http://purl.obolibrary.org/obo/ZP_0000000
     prefix_iri: http://purl.obolibrary.org/obo/ZP_
     taxon: http://purl.obolibrary.org/obo/ZP
     taxon_label: ZPO
@@ -207,7 +203,6 @@ sources:
       - mpath
       - bfo
       - zfa-uberon
-      - bspo-uberon
       - caro-uberon
   - id: dpo
     mirror_from: http://purl.obolibrary.org/obo/dpo/dpo-base.owl

diff --git a/src/sparql/zp_phenotypes.sparql b/src/sparql/zp_phenotypes.sparql
@@ -4,7 +4,7 @@ prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
 
 SELECT ?s ?lab ?ldef WHERE 
 {
-?s rdfs:subClassOf* <http://purl.obolibrary.org/obo/ZP_00000000> . 
+?s rdfs:subClassOf* <http://purl.obolibrary.org/obo/ZP_0000000> . 
 OPTIONAL { ?s rdfs:label ?lab }
 OPTIONAL { ?s owl:equivalentClass [ rdf:type owl:Restriction ;
 owl:onProperty <http://purl.obolibrary.org/obo/BFO_0000051> ;