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Add APO mapping tables to uPheno repo
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matentzn committed Sep 4, 2024
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87 changes: 87 additions & 0 deletions src/mappings/apo_go.sssom.tsv
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subject_id subject_label predicate_id object_id object_label comment
APO:0000102 respiratory metabolism skos:exactMatch GO:0045333 cellular respiration
APO:0000101 fermentative metabolism skos:broadMatch GO:0006113 fermentation
APO:0000022 protein activity skos:narrowMatch GO:0003824 catalytic activity
APO:0000024 budding skos:exactMatch GO:0007114 cell budding
APO:0000027 filamentous growth skos:exactMatch GO:0030447 filamentous growth
APO:0000028 invasive growth skos:exactMatch GO:0036267 invasive filamentous growth
APO:0000029 pseudohyphal growth skos:exactMatch GO:0007124 pseudohyphal growth
APO:0000032 mating response skos:broadMatch GO:0019236 response to pheromone
APO:0000033 cell fusion skos:exactMatch GO:0140253 cell-cell fusion
APO:0000035 nuclear fusion during mating skos:exactMatch GO:0048288 nuclear membrane fusion involved in karyogamy
APO:0000036 pheromone production skos:exactMatch GO:0042811 pheromone biosynthetic process
APO:0000037 pheromone sensitivity skos:broadMatch GO:0019236 response to pheromone
APO:0000038 shmoo formation skos:exactMatch GO:0031382 mating projection formation
APO:0000039 meiosis skos:exactMatch GO:0051321 meiotic cell cycle
APO:0000040 meiotic recombination skos:exactMatch GO:0007131 reciprocal meiotic recombination
APO:0000041 sporulation skos:exactMatch GO:0043934 sporulation
APO:0000042 spore germination skos:exactMatch GO:0009847 spore germination
APO:0000043 spore wall formation skos:exactMatch GO:0042244 spore wall assembly
APO:0000046 silencing skos:exactMatch GO:0031507 heterochromatin formation
APO:0000047 transposable element transposition skos:exactMatch GO:0006313 DNA transposition
APO:0000065 flocculation skos:exactMatch GO:0000128 flocculation
APO:0000071 cytokinesis skos:exactMatch GO:0000910 cytokinesis
APO:0000072 mitotic cell cycle skos:exactMatch GO:0000278 mitotic cell cycle
APO:0000073 intracellular transport skos:exactMatch GO:0046907 intracellular transport
APO:0000074 autophagy skos:exactMatch GO:0006914 autophagy
APO:0000075 endocytosis skos:exactMatch GO:0006897 endocytosis
APO:0000076 mitochondrial transport skos:exactMatch GO:0006839 mitochondrial transport
APO:0000077 nuclear transport skos:exactMatch GO:0051169 nuclear transport
APO:0000078 protein secretion skos:exactMatch GO:0009306 protein secretion
APO:0000079 vacuolar transport skos:exactMatch GO:0007034 vacuolar transport
APO:0000096 nutrient utilization skos:exactMatch GO:0031667 response to nutrient levels
APO:0000098 utilization of carbon source skos:exactMatch GO:0015976 carbon utilization
APO:0000099 utilization of nitrogen source skos:exactMatch GO:0019740 nitrogen utilization
APO:0000100 nutrient uptake skos:broadMatch GO:0098739 import across plasma membrane
APO:0000105 mitochondrial genome maintenance skos:exactMatch GO:0000002 mitochondrial genome maintenance
APO:0000123 recovery from pheromone-induced cell cycle arrest skos:exactMatch GO:0000321 re-entry into mitotic cell cycle after pheromone arrest
APO:0000124 pheromone-induced cell cycle arrest skos:exactMatch GO:0000751 mitotic cell cycle G1 arrest in response to pheromone
APO:0000125 utilization of phosphorus source skos:exactMatch GO:0006794 phosphorus utilization
APO:0000126 nuclear import skos:exactMatch GO:0051170 import into nucleus
APO:0000127 nuclear export skos:exactMatch GO:0051168 nuclear export
APO:0000128 peroxisomal transport skos:exactMatch GO:0043574 peroxisomal transport
APO:0000129 protein transport skos:exactMatch GO:0006886 intracellular protein transport
APO:0000130 small molecule transport skos:broadMatch GO:0006810 transport
APO:0000131 protein/peptide modification skos:exactMatch GO:0036211 protein modification process
APO:0000132 RNA localization skos:exactMatch GO:0006403 RNA localization
APO:0000143 chromosome/plasmid maintenance skos:relatedMatch GO:0051276 chromosome organization
APO:0000145 oxidative phosphorylation skos:exactMatch GO:0006119 oxidative phosphorylation
APO:0000155 apoptosis skos:exactMatch GO:0006915 apoptotic process
APO:0000157 utilization of iron source skos:broadMatch GO:0031667 response to nutrient levels
APO:0000159 biofilm formation skos:exactMatch GO:0042710 biofilm formation
APO:0000196 mating type switching skos:exactMatch GO:0007533 mating type switching
APO:0000208 chromosome segregation skos:exactMatch GO:0007059 chromosome segregation
APO:0000219 utilization of sulfur source skos:exactMatch GO:0006791 sulfur utilization
APO:0000220 necrotic cell death skos:exactMatch GO:0097300 programmed necrotic cell death
APO:0000221 septum formation skos:exactMatch GO:0000921 septin ring assembly
APO:0000222 chemical compound excretion skos:broadMatch GO:0007588 excretion
APO:0000225 mitotic recombination skos:exactMatch GO:0006312 mitotic recombination
APO:0000239 pexophagy skos:exactMatch GO:0000425 pexophagy
APO:0000240 mitophagy skos:exactMatch GO:0000423 mitophagy
APO:0000253 cell cycle progression skos:exactMatch GO:0007049 cell cycle
APO:0000254 cell cycle progression in G2 phase skos:exactMatch GO:0000085 mitotic G2 phase
APO:0000255 cell cycle progression in G1 phase skos:exactMatch GO:0000080 mitotic G1 phase
APO:0000256 cell cycle passage through START skos:exactMatch GO:0007089 traversing start control point of mitotic cell cycle
APO:0000257 cell cycle progression through the G2/M phase transition skos:exactMatch GO:0000086 G2/M transition of mitotic cell cycle
APO:0000258 cell cycle progression in M phase skos:exactMatch GO:0000087 mitotic M phase
APO:0000259 cell cycle passage through the metaphaseanaphase transition skos:exactMatch GO:0007091 metaphase/anaphase transition of mitotic cell cycle
APO:0000260 cell cycle progression in anaphase skos:exactMatch GO:0000090 mitotic anaphase
APO:0000262 cell cycle progression in mid anaphase skos:exactMatch GO:0000091 mitotic anaphase A
APO:0000263 cell cycle progression in late anaphase skos:exactMatch GO:0000092 mitotic anaphase B
APO:0000264 cell cycle progression in metaphase skos:exactMatch GO:0000089 mitotic metaphase
APO:0000265 cell cycle progression in telophase skos:exactMatch GO:0000093 mitotic telophase
APO:0000266 cell cycle progression in S phase skos:exactMatch GO:0000084 mitotic S phase
APO:0000267 entry into G0 (stationary phase) skos:exactMatch GO:0070314 G1 to G0 transition
APO:0000268 exit from G0 (stationary phase) skos:exactMatch GO:0045023 G0 to G1 transition
APO:0000269 cell cycle progression through the G1/S phase transition skos:exactMatch GO:0044843 cell cycle G1/S phase transition
APO:0000271 RNA modification skos:exactMatch GO:0009451 RNA modification
APO:0000275 prion inheritance skos:broadMatch GO:0008150 biological_process
APO:0000276 prion formation skos:broadMatch GO:0008150 biological_process
APO:0000277 prion loss skos:broadMatch GO:0008150 biological_process
APO:0000288 adhesion skos:exactMatch GO:0007155 cell adhesion
APO:0000312 cell death skos:exactMatch GO:0008219 cell death
APO:0000338 micronucleophagy skos:broadMatch GO:0044804 nucleophagy
APO:0000339 ribophagy skos:exactMatch GO:0034517 ribophagy
APO:0000340 reticulophagy skos:exactMatch GO:0061709 reticulophagy
APO:0000341 nucleophagy skos:exactMatch GO:0044804 nucleophagy
APO:0000342 late nucleophagy skos:broadMatch GO:0044804 nucleophagy
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