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v0.1.3
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@okunator okunator released this 15 Jan 18:41
· 37 commits to master since this release
v0.1.3
508d8b8

0.1.3 — 2023-12-22

Breaking changes

  • The SpatialContext API now takes params: parallel and num_processes in the class constructor instead of the fit()-method.

Features

  • Added support for new backends (python libraries) to compute the spatial joins in the SpatialContext-classes. This allows for more efficient computation of the spatial joins especially for very large tissue areas.

  • Backends:

    • dask-geopandas
    • spatialpandas

  • Add h3 hexgrid support in grid fitting for spatial context classes

Performance

  • sjoin operations replaced with sindex ops. This makes subsetting 10-100x faster.

Docs

New documentation website: https://okunator.github.io/cellseg_gsontools/

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