Update test_Annotation.py

oncokb · Nov 14, 2023 · a38a72f · a38a72f
1 parent 2c451a7
commit a38a72f
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/test_Annotation.py b/test_Annotation.py
@@ -317,17 +317,17 @@ def test_fake_cna():
 def check_brca2_s1882_without_cancertype(annotation, genomic_query=False):
     assert len(annotation) == NUMBER_OF_GC_ANNOTATION_COLUMNS if genomic_query else NUMBER_OF_ANNOTATION_COLUMNS
     assert annotation[(
-                NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + MUTATION_EFFECT_INDEX) if genomic_query else MUTATION_EFFECT_INDEX] == 'Likely Loss-of-function'
+            NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + MUTATION_EFFECT_INDEX) if genomic_query else MUTATION_EFFECT_INDEX] == 'Likely Loss-of-function'
     assert annotation[(
             NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + ONCOGENIC_INDEX) if genomic_query else ONCOGENIC_INDEX] == 'Likely Oncogenic'
     assert annotation[(
-                NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + HIGHEST_LEVEL_INDEX) if genomic_query else HIGHEST_LEVEL_INDEX] == 'LEVEL_1'
+            NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + HIGHEST_LEVEL_INDEX) if genomic_query else HIGHEST_LEVEL_INDEX] == 'LEVEL_1'
     assert annotation[(
-                NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + LEVEL_1_INDEX) if genomic_query else LEVEL_1_INDEX] == 'Olaparib,Olaparib+Bevacizumab,Rucaparib,Olaparib+Abiraterone+Prednisone,Niraparib,Olaparib+Abiraterone+Prednisolone,Talazoparib+Enzalutamide,Niraparib+Abiraterone Acetate+Prednisone'
+            NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + LEVEL_1_INDEX) if genomic_query else LEVEL_1_INDEX] == 'Olaparib,Olaparib+Bevacizumab,Rucaparib,Olaparib+Abiraterone+Prednisone,Niraparib,Olaparib+Abiraterone+Prednisolone,Talazoparib+Enzalutamide,Niraparib+Abiraterone Acetate+Prednisone'
     assert annotation[(
-                NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + LEVEL_2_INDEX) if genomic_query else LEVEL_2_INDEX] == 'Olaparib,Rucaparib,Niraparib'
+            NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + LEVEL_2_INDEX) if genomic_query else LEVEL_2_INDEX] == 'Olaparib,Rucaparib,Niraparib'
     assert annotation[(
-                NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + LEVEL_3A_INDEX) if genomic_query else LEVEL_3A_INDEX] == 'Olaparib,Talazoparib'
+            NUMBER_OF_ONCOKB_ANNOTATION_GC_COLUMNS + LEVEL_3A_INDEX) if genomic_query else LEVEL_3A_INDEX] == 'Olaparib,Talazoparib'
 
 
 @pytest.mark.skipif(ONCOKB_API_TOKEN in (None, ''), reason="oncokb api token required")