v3.1.1

Changes

• Decrease the GenomicChange annotation batch size to 100 so the output is more user friendly

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• v3.1.0...v3.1.1

v3.1.0

🐛 Bug Fixes

• Raise exception for incorrect api key @amcpherson (#132)
• Do not include duplicate drug name when cancer type is empty @zhx828 (#131)
• Fix variant allele issue when both copies are different & Add genomic change tests @zhx828 (#130)

📘 Documentation

• Fix a typo in MafAnnotator.py @ygindinrevmed (#129)

👷‍♀️ Testing, Configuration & Deployment

• Split github action for annotation tests @zhx828 (#133)

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• v3.0.2...v3.1.0

v3.0.2

Changes

• Update tests based on data v3.4
• Reduce post query size for genomic change and hgvsg annotations

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• v3.0.1...v3.0.2

v3.0.1

🐛 Bug Fixes

• Check Class has the property before checking the value @zhx828 (#128)

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• v3.0.0...v3.0.1

v3.0.0

🧬 Features

• Include diagnostic/prognostic annotation @zhx828 (#116)

🐛 Bug Fixes

• Fix issue when input file is empty @zhx828 (#118)

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• v2.5.2...v3.0.0

v2.5.2

🐛 Bug Fixes

• Do not split TCGA sample id prefix @zhx828 (#115)

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• v2.5.1...v2.5.2

v2.5.1

🐛 Bug Fixes

• Give warning when sample CNA is not specified @zhx828 (#111)

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• v2.5.0...v2.5.1

v2.5.0

🐛 Bug Fixes

• Do not prefilter the variants with curated genes @zhx828 (#107)
• Fix hotspot annotation @zhx828 (#105)

📘 Documentation

• Update MafAnnotator help description @zhx828 (#103)

🧰 Maintenance

• Specify kiwisolver version for python 2/3 @zhx828 (#109)

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• v2.4.0...v2.5.0

v2.4.0

🧬 Features

• Support reference genome @zhx828 (#102)
• Support HGVSg and Genomic Change annotation @zhx828 (#97)

👷‍♀️ Testing, Configuration & Deployment

• Rename action to compare-study-annotation @zhx828
• Include action(compare-study-annotation) to run annotation against the master annotation @zhx828 (#100, #101)

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• v2.3.4...v2.4.0

v2.3.4

Changes

• Pad row with empty values for all columns @zhx828 (#96)

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• v2.3.3...v2.3.4