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Einsum decomposition #1537

Merged
merged 41 commits into from
Jul 15, 2022
Merged

Einsum decomposition #1537

merged 41 commits into from
Jul 15, 2022

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sorenlassen
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This PR implements ONNXEinsumOp verify(), inferShapes(), and decomposes it into a set of supported ops (Constant, Squeeze, Unsqueeze, Mul, ReduceSum, Where, Transpose).

Closes #1367

It is based on a preexisting python implementation here:
https://github.com/sorenlassen/onnx-fun/blob/main/python/src/einsummer.py

Testing:

Added the onnx einsum tests to inference_backend.py and ran them with the command:
TEST_VERBOSE=true TEST_CASE_BY_USER="test_einsum_batch_diagonal_cpu test_einsum_batch_matmul_cpu test_einsum_inner_prod_cpu test_einsum_transpose_cpu test_einsum_sum_cpu" cmake --build . --target check-onnx-backend

Added shape inference tests in onnx_shape_inference.mlir

Added a unit test which can be run with:
ctest -R TestONNXEinsumOp --verbose

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Can one of the admins verify this patch?

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Can one of the admins verify this patch?

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Can one of the admins verify this patch?

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Can one of the admins verify this patch?

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Can one of the admins verify this patch?

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tungld commented Jul 12, 2022

@jenkins-droid test this please

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tungld commented Jul 12, 2022

@sorenlassen thank you for the patch!

Could you please sign DCO by following its instruction (click Details by DCO)? To avoid this, we often sign our commits by git -s.
For the clang-format issue, you can call git clang-format locally to format the code. Thanks!

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Can one of the admins verify this patch?

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Can one of the admins verify this patch?

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oops, I DCO signed the last commits now

I also ran clang-format just now

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tungld commented Jul 12, 2022

oops, I DCO signed the last commits now

I think we need to sign all the previous commits.

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sorenlassen commented Jul 12, 2022

oops, I DCO signed the last commits now

I think we need to sign all the previous commits.

I had signed the initial batch of commits yesterday but hadn't signed the follow-on commits today

when I ran the DCO suggested command git rebase HEAD~22 --signoff it also signed the MHLO commit:
https://github.com/sorenlassen/onnx-mlir-einsum/commit/d2a0cf37140ec032c6c741b923dd2b1c4afbad9f
which looked wrong, so I manually scrubbed my signoff on that

shall I signoff on the MHLO commit to make the DCO check happy?

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tungld commented Jul 12, 2022

@jenkins-droid test this please

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shall I signoff on the MHLO commit to make the DCO check happy?

I rebased and went ahead and signed off on other people's MHLO and SeqType/LoopOp commits, hopefully this is all right and will pass the DCO check

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Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
Added Einsum to OpsWithVerifier list in gen_onnx_mlir.py

Ran utils/gen_onnx_mlir.py

Moved utils/ONNXOps.td.inc to src/Dialect/ONNX/

Moved utils/OpBuildTable.inc to src/Builder (but was unchanged)

TODO: fill in the skeleton verifier for Einsum
Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
Implemented for batch_diagonal, inner_prod, batch_matmul, transpose, sum

Tested with

   TEST_VERBOSE=true \
   TEST_CASE_BY_USER="test_einsum_batch_diagonal_cpu test_einsum_batch_matmul_cpu test_einsum_inner_prod_cpu test_einsum_transpose_cpu test_einsum_sum_cpu" \
   PYTHONPATH=$PWD/build/test/backend/Debug \
   python3 test/backend/test.py

Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
build and run with:

cd build
cmake --build . --target Debug/bin/TestONNXEinsumOp &&
ctest -R TestONNXEinsumOp --verbose

Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
and used it in DecomposeEinsum

Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
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tungld commented Jul 14, 2022

@jenkins-droid test this please

Added new matmulToMemref() with the old behavior and updated existing callers.

Used matmul() without toMemref() in DecomposeEinsum.

Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
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and used it in DecomposeEinsum

Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
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tungld commented Jul 14, 2022

@jenkins-droid test this please

Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
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tungld commented Jul 14, 2022

@jenkins-droid test this please

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tungld commented Jul 14, 2022

@sorenlassen could you please check why the lit test in onnx_shape_inference_error_einsum.mlir failed? Thanks!

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@sorenlassen could you please check why the lit test in onnx_shape_inference_error_einsum.mlir failed? Thanks!

it succeeds for me locally, as far as I can tell

is the CI failing? how can I see the failure?

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tungld commented Jul 14, 2022

is the CI failing? how can I see the failure?

Yes, can you view the CI logs when clicking Details button by each Jenkins CI?

Here is the log:

[100%] Built target onnx-mlir
Scanning dependencies of target check-onnx-lit
[100%] Running the ONNX-MLIR regression tests
-- Testing: 152 tests, 32 workers --
Testing:  0.. 10.. 20.. 30.. 40.. 50.. 60.. 70.. 80.. 90.
FAIL: Open Neural Network Frontend :: onnx/onnx_shape_inference_error_einsum.mlir (149 of 152)
******************** TEST 'Open Neural Network Frontend :: onnx/onnx_shape_inference_error_einsum.mlir' FAILED ********************
Script:
--
: 'RUN: at line 1';   /workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt --shape-inference /workdir/onnx-mlir/test/mlir/onnx/onnx_shape_inference_error_einsum.mlir -split-input-file -verify-diagnostics
--
Exit Code: 139

Command Output (stderr):
--
PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
Stack dump:
0.	Program arguments: /workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt --shape-inference /workdir/onnx-mlir/test/mlir/onnx/onnx_shape_inference_error_einsum.mlir -split-input-file -verify-diagnostics
 #0 0x00005565ab5350c4 PrintStackTraceSignalHandler(void*) Signals.cpp:0:0
 #1 0x00005565ab532864 SignalHandler(int) Signals.cpp:0:0
 #2 0x00007f31720e3420 __restore_rt (/lib/x86_64-linux-gnu/libpthread.so.0+0x14420)
 #3 0x00005565ab4010e5 mlir::Operation::emitError(llvm::Twine const&) (/workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt+0x1d1e0e5)
 #4 0x00005565ab401c50 mlir::Operation::emitOpError(llvm::Twine const&) (/workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt+0x1d1ec50)
 #5 0x00005565ab402945 mlir::OpState::emitOpError(llvm::Twine const&) (/workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt+0x1d1f945)
 #6 0x00005565a98fc5d0 mlir::ONNXEinsumOp::verify()::'lambda'()::operator()() const /workdir/onnx-mlir/src/Dialect/ONNX/ONNXOps.cpp:4021:35
 #7 0x00005565a9ab4c45 mlir::InFlightDiagnostic llvm::function_ref<mlir::InFlightDiagnostic ()>::callback_fn<mlir::ONNXEinsumOp::verify()::'lambda'()>(long) /workdir/llvm-project/llvm/include/llvm/ADT/STLFunctionalExtras.h:47:3
 #8 0x00005565a9ca8378 llvm::function_ref<mlir::InFlightDiagnostic ()>::operator()() const /workdir/llvm-project/llvm/include/llvm/ADT/STLFunctionalExtras.h:69:3
 #9 0x00005565a9ca48f9 onnx_mlir::einsum::verifyEquation(llvm::StringRef, unsigned long, llvm::function_ref<mlir::InFlightDiagnostic ()>) /workdir/onnx-mlir/src/Dialect/ONNX/ONNXEinsumOpHelper.cpp:55:29
#10 0x00005565a98fc768 mlir::ONNXEinsumOp::verify() /workdir/onnx-mlir/src/Dialect/ONNX/ONNXOps.cpp:4027:13
#11 0x00005565a9b89d60 mlir::Op<mlir::ONNXEinsumOp, mlir::OpTrait::ZeroRegion, mlir::OpTrait::OneResult, mlir::OpTrait::OneTypedResult<mlir::Type>::Impl, mlir::OpTrait::ZeroSuccessor, mlir::OpTrait::VariadicOperands, mlir::OpTrait::OpInvariants, mlir::MemoryEffectOpInterface::Trait, mlir::ShapeInference::Trait>::verifyInvariants(mlir::Operation*) /workdir/llvm-project/mlir/include/mlir/IR/OpDefinition.h:1851:15
#12 0x00005565a98bb5d4 mlir::LogicalResult llvm::detail::UniqueFunctionBase<mlir::LogicalResult, mlir::Operation*>::CallImpl<mlir::LogicalResult (* const)(mlir::Operation*)>(void*, mlir::Operation*) /workdir/llvm-project/llvm/include/llvm/ADT/FunctionExtras.h:223:3
#13 0x00005565ab42d6c9 (anonymous namespace)::OperationVerifier::verifyOperation(mlir::Operation&) Verifier.cpp:0:0
#14 0x00005565ab42dd3c (anonymous namespace)::OperationVerifier::verifyOperation(mlir::Operation&) Verifier.cpp:0:0
#15 0x00005565ab42e8b5 (anonymous namespace)::OperationVerifier::verifyOperation(mlir::Operation&) Verifier.cpp:0:0
#16 0x00005565ab42fbea mlir::verify(mlir::Operation*, bool) (/workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt+0x1d4cbea)
#17 0x00005565ab314b6c mlir::parseSourceFile(llvm::SourceMgr const&, mlir::Block*, mlir::MLIRContext*, mlir::LocationAttr*, mlir::AsmParserState*) (/workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt+0x1c31b6c)
#18 0x00005565aa1698bd performActions(llvm::raw_ostream&, bool, bool, llvm::SourceMgr&, mlir::MLIRContext*, llvm::function_ref<mlir::LogicalResult (mlir::PassManager&)>) (.constprop.0) MlirOptMain.cpp:0:0
#19 0x00005565aa16a3fb processBuffer(llvm::raw_ostream&, std::unique_ptr<llvm::MemoryBuffer, std::default_delete<llvm::MemoryBuffer> >, bool, bool, bool, bool, llvm::function_ref<mlir::LogicalResult (mlir::PassManager&)>, mlir::DialectRegistry&, llvm::ThreadPool*) MlirOptMain.cpp:0:0
#20 0x00005565aa16a95c mlir::LogicalResult llvm::function_ref<mlir::LogicalResult (std::unique_ptr<llvm::MemoryBuffer, std::default_delete<llvm::MemoryBuffer> >, llvm::raw_ostream&)>::callback_fn<mlir::MlirOptMain(llvm::raw_ostream&, std::unique_ptr<llvm::MemoryBuffer, std::default_delete<llvm::MemoryBuffer> >, llvm::function_ref<mlir::LogicalResult (mlir::PassManager&)>, mlir::DialectRegistry&, bool, bool, bool, bool, bool)::'lambda'(std::unique_ptr<llvm::MemoryBuffer, std::default_delete<llvm::MemoryBuffer> >, llvm::raw_ostream&)>(long, std::unique_ptr<llvm::MemoryBuffer, std::default_delete<llvm::MemoryBuffer> >, llvm::raw_ostream&) MlirOptMain.cpp:0:0
#21 0x00005565ab445fad mlir::splitAndProcessBuffer(std::unique_ptr<llvm::MemoryBuffer, std::default_delete<llvm::MemoryBuffer> >, llvm::function_ref<mlir::LogicalResult (std::unique_ptr<llvm::MemoryBuffer, std::default_delete<llvm::MemoryBuffer> >, llvm::raw_ostream&)>, llvm::raw_ostream&) (/workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt+0x1d62fad)
#22 0x00005565aa16aaf9 mlir::MlirOptMain(llvm::raw_ostream&, std::unique_ptr<llvm::MemoryBuffer, std::default_delete<llvm::MemoryBuffer> >, mlir::PassPipelineCLParser const&, mlir::DialectRegistry&, bool, bool, bool, bool, bool) (/workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt+0xa87af9)
#23 0x00005565a97f3967 main /workdir/onnx-mlir/src/Tools/onnx-mlir-opt/onnx-mlir-opt.cpp:168:16
#24 0x00007f3171bb5083 __libc_start_main (/lib/x86_64-linux-gnu/libc.so.6+0x24083)
#25 0x00005565a97f21be _start (/workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt+0x10f1be)
/workdir/onnx-mlir/build/test/mlir/onnx/Output/onnx_shape_inference_error_einsum.mlir.script: line 1:  6707 Segmentation fault      (core dumped) /workdir/onnx-mlir/build/Debug/bin/onnx-mlir-opt --shape-inference /workdir/onnx-mlir/test/mlir/onnx/onnx_shape_inference_error_einsum.mlir -split-input-file -verify-diagnostics

--

It passed for me locally but failed in the CI and I coudn't tell why. It wasn't important anyway.

Signed-off-by: Soren Lassen <sorenlassen@gmail.com>
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@tungld thanks for the info

It passed for me locally and I can't tell why it fails in the CO. It wasn't important anyway, so I removed it now.

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tungld commented Jul 14, 2022

@jenkins-droid test this please

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LGTM. Thank you very much!

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LGTM. Thank you very much!

thanks for the review!

could you merge it for me?

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tungld commented Jul 14, 2022

could you merge it for me?

Yes, sure. I am waiting for comments from other reviewers if any. Otherwise, I will merge it tomorrow.

@tungld tungld merged commit a1f2a25 into onnx:main Jul 15, 2022
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Jenkins Linux s390x Build #6627 [push] Einsum decomposition (#1... started at 22:13

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Jenkins Linux amd64 Build #6611 [push] Einsum decomposition (#1... started at 21:14

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Jenkins Linux ppc64le Build #5723 [push] Einsum decomposition (#1... started at 22:16

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Jenkins Linux s390x Build #6627 [push] Einsum decomposition (#1... passed after 1 hr 24 min

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Jenkins Linux ppc64le Build #5723 [push] Einsum decomposition (#1... passed after 1 hr 34 min

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Jenkins Linux amd64 Build #6611 [push] Einsum decomposition (#1... passed after 1 hr 43 min

@sorenlassen sorenlassen deleted the einsum-decomp branch August 22, 2022 15:20
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Einsum support via Decomposition
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