Bump com.sun.xml.bind:jaxb-impl from 2.3.3 to 4.0.5

.github/workflows/pull-request.yaml

@@ -0,0 +1,29 @@
+name: Gradle Build & Test
+
+on:
+  pull_request:
+    branches: [ "master" ]
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up GraalVM JDK 17
+        uses: graalvm/setup-graalvm@v1
+        with:
+          java-version: '17'
+          distribution: 'graalvm-community'
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+      - name: Gradle Build
+        uses: gradle/gradle-build-action@v2.8.0
+        with:
+          arguments: build
+        env:
+          ORG_GRADLE_PROJECT_mavenUser: ${{ github.actor }}
+          ORG_GRADLE_PROJECT_mavenPassword: ${{ secrets.GITHUB_TOKEN }}
+          ORG_GRADLE_PROJECT_snapshotsRepoURL: https://maven.pkg.github.com/${{ github.repository }}
+          ORG_GRADLE_PROJECT_releasesRepoURL: https://maven.pkg.github.com/${{ github.repository }}

.github/workflows/push.yaml

@@ -0,0 +1,29 @@
+name: Gradle Build & Test
+
+on:
+  pull_request:
+    branches: [ "master" ]
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up GraalVM JDK 17
+        uses: graalvm/setup-graalvm@v1
+        with:
+          java-version: '17'
+          distribution: 'graalvm-community'
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+      - name: Gradle Build
+        uses: gradle/gradle-build-action@v2.8.0
+        with:
+          arguments: build
+        env:
+          ORG_GRADLE_PROJECT_mavenUser: ${{ github.actor }}
+          ORG_GRADLE_PROJECT_mavenPassword: ${{ secrets.GITHUB_TOKEN }}
+          ORG_GRADLE_PROJECT_snapshotsRepoURL: https://maven.pkg.github.com/${{ github.repository }}
+          ORG_GRADLE_PROJECT_releasesRepoURL: https://maven.pkg.github.com/${{ github.repository }}

bmm/src/main/java/org/openehr/bmm/core/BmmContainerType.java

@@ -21,6 +21,8 @@
  * Author: Claude Nanjo
  */
 
+import org.openehr.bmm.persistence.validation.BmmDefinitions;
+
 import java.util.List;
 
 /**
@@ -36,7 +38,7 @@ public class BmmContainerType extends BmmType {
     private BmmGenericClass containerType;
 
     /**
-     *
+     * The type of the contained item
      */
     private BmmUnitaryType baseType;
 
@@ -90,7 +92,8 @@ public void setBaseType(BmmUnitaryType baseType) {
      */
     @Override
     public String getTypeName() {
-        return containerType.getName() + "<" + baseType.getTypeName() + ">";
+        return containerType.getName() +
+                BmmDefinitions.GENERIC_LEFT_DELIMITER + baseType.getTypeName() + BmmDefinitions.GENERIC_RIGHT_DELIMITER;
     }
 
     /**

bmm/src/main/java/org/openehr/bmm/core/BmmIndexedContainerProperty.java

@@ -0,0 +1,28 @@
+package org.openehr.bmm.core;
+
+import com.nedap.archie.base.MultiplicityInterval;
+
+/**
+ * Subtype of BMM_CONTAINER_PROPERTY that represents an indexed container type based on one of the inbuilt types
+ * Hash <>.
+ */
+public class BmmIndexedContainerProperty extends BmmProperty<BmmIndexedContainerType> {
+
+    /**
+     * We have to replicate cardinality here from BmmContainerProperty since we are inheriting from
+     * BmmProperty &lt;BmmIndexedContainerType&gt; (which creates correct typing of the 'type' property) not BmmContainerProperty
+     */
+    private MultiplicityInterval cardinality;
+
+    public BmmIndexedContainerProperty (String aName, BmmIndexedContainerType aType, String aDocumentation, boolean isMandatoryFlag, boolean isComputedFlag) {
+        super(aName, aType, aDocumentation, isMandatoryFlag, isComputedFlag);
+        cardinality = MultiplicityInterval.createOpen();
+    }
+
+    public MultiplicityInterval getCardinality() {
+        return cardinality;
+    }
+    public void setCardinality(MultiplicityInterval cardinality) {
+        this.cardinality = cardinality;
+    }
+}

bmm/src/main/java/org/openehr/bmm/core/BmmIndexedContainerType.java

@@ -0,0 +1,26 @@
+package org.openehr.bmm.core;
+
+import org.openehr.bmm.persistence.validation.BmmDefinitions;
+
+public class BmmIndexedContainerType extends BmmContainerType {
+
+    /**
+     * The type of the index
+     */
+    private BmmSimpleType indexType;
+    public BmmIndexedContainerType (BmmUnitaryType aBaseType, BmmSimpleType anIndexType, BmmGenericClass aContainerClass) {
+        super (aBaseType, aContainerClass);
+        indexType = anIndexType;
+    }
+    public BmmSimpleType getIndexType() { return indexType; }
+
+    @Override
+    public String getTypeName() {
+        return getContainerType().getName() +
+                BmmDefinitions.GENERIC_LEFT_DELIMITER +
+                indexType.getTypeName() + BmmDefinitions.GENERIC_SEPARATOR +
+                getBaseType().getTypeName() +
+                BmmDefinitions.GENERIC_RIGHT_DELIMITER;
+    }
+
+}

bmm/src/main/java/org/openehr/bmm/v2/persistence/PBmmIndexedContainerProperty.java

@@ -0,0 +1,41 @@
+package org.openehr.bmm.v2.persistence;
+
+import com.nedap.archie.base.Interval;
+import com.nedap.archie.base.MultiplicityInterval;
+import org.openehr.bmm.core.*;
+import org.openehr.bmm.v2.validation.converters.BmmClassProcessor;
+
+public class PBmmIndexedContainerProperty extends PBmmProperty<PBmmIndexedContainerType> {
+
+    /**
+     * We have to replicate cardinality here from PBmmContainerProperty since we are inheriting from
+     * PBmmProperty<PBmmIndexedContainerType> (which creates correct typing of typeDef) not PBmmContainerProperty
+     */
+    private Interval<Integer> cardinality;
+
+    public Interval<Integer> getCardinality() {
+        return cardinality;
+    }
+    public void setCardinality(Interval<Integer> cardinality) {
+        this.cardinality = cardinality;
+    }
+    public PBmmIndexedContainerProperty() {
+        super();
+    }
+    @Override
+    public BmmIndexedContainerProperty createBmmProperty(BmmClassProcessor classProcessor, BmmClass bmmClass) {
+        PBmmIndexedContainerType typeRef = getTypeRef();
+        if (typeRef != null) {
+            BmmIndexedContainerType bmmType = (BmmIndexedContainerType) typeRef.createBmmType(classProcessor, bmmClass);
+            BmmIndexedContainerProperty bmmProperty = new BmmIndexedContainerProperty(getName(), bmmType, getDocumentation(), nullToFalse(isMandatory()), nullToFalse(isComputed()));
+            if (getCardinality() != null) {
+                bmmProperty.setCardinality(new MultiplicityInterval(getCardinality()));
+            }
+            populateImBooleans(bmmProperty);
+            return bmmProperty;
+        }
+        throw new RuntimeException("BmmTypeCreate failed for type " + typeRef + " of property "
+                + getName() + " in class " + bmmClass.getName());
+    }
+
+}

bmm/src/main/java/org/openehr/bmm/v2/persistence/PBmmIndexedContainerType.java

@@ -0,0 +1,57 @@
+package org.openehr.bmm.v2.persistence;
+
+import org.openehr.bmm.core.*;
+import org.openehr.bmm.persistence.validation.BmmDefinitions;
+import org.openehr.bmm.v2.validation.converters.BmmClassProcessor;
+
+import java.util.ArrayList;
+import java.util.List;
+
+public class PBmmIndexedContainerType extends PBmmContainerType {
+
+    private String indexType;
+
+    public String getIndexType() {
+        return indexType;
+    }
+
+    public void setIndexType(String indexType) {
+        this.indexType = indexType;
+    }
+
+    @Override
+    public BmmIndexedContainerType createBmmType(BmmClassProcessor processor, BmmClass classDefinition) {
+        BmmClass containerClassDef = processor.getClassDefinition (getContainerType());
+        BmmClass indexClassDef = processor.getClassDefinition (indexType);
+        PBmmUnitaryType containedType = getTypeRef(); //get the actual typeref for conversion
+        if (containerClassDef instanceof BmmGenericClass &&
+                indexClassDef instanceof BmmSimpleClass &&
+                containedType != null)
+        {
+            BmmType containedBmmType = containedType.createBmmType(processor, classDefinition);
+            if (containedBmmType instanceof BmmUnitaryType) {
+                return new BmmIndexedContainerType((BmmUnitaryType) containedBmmType,
+                        ((BmmSimpleClass) indexClassDef).getType(),
+                        (BmmGenericClass) containerClassDef);
+            }
+        }
+
+        throw new RuntimeException("BmmClass " + containerClassDef.getName() + " is not defined in this model or not an indexed container type");
+    }
+    @Override
+    public String asTypeString() {
+        return getContainerType() + BmmDefinitions.GENERIC_LEFT_DELIMITER +
+                indexType + BmmDefinitions.GENERIC_SEPARATOR + getTypeRef().asTypeString() +
+                BmmDefinitions.GENERIC_RIGHT_DELIMITER;
+    }
+    @Override
+    public List<String> flattenedTypeList() {
+        List<String> result = new ArrayList<>();
+        result.add(getContainerType());
+        result.add(indexType);
+        if (getTypeRef() != null) {
+            result.addAll(getTypeRef().flattenedTypeList());
+        }
+        return result;
+    }
+}

bmm/src/main/java/org/openehr/bmm/v2/persistence/jackson/BmmTypeNaming.java

@@ -25,6 +25,7 @@ public class BmmTypeNaming extends ClassNameIdResolver {
         put("BMM_INCLUDE_SPEC", BmmIncludeSpec.class).
         put("P_BMM_CLASS", PBmmClass.class).
         put("P_BMM_CONTAINER_PROPERTY", PBmmContainerProperty.class).
+            put("P_BMM_INDEXED_CONTAINER_PROPERTY", PBmmIndexedContainerProperty.class).
         put("P_BMM_ENUMERATION", PBmmEnumeration.class).
         put("P_BMM_ENUMERATION_STRING", PBmmEnumerationString.class).
         put("P_BMM_ENUMERATION_INTEGER", PBmmEnumerationInteger.class).
@@ -33,6 +34,7 @@ public class BmmTypeNaming extends ClassNameIdResolver {
         put("P_BMM_GENERIC_TYPE", PBmmGenericType.class).
         put("P_BMM_OPEN_TYPE", PBmmOpenType.class).
         put("P_BMM_CONTAINER_TYPE", PBmmContainerType.class).
+            put("P_BMM_INDEXED_CONTAINER_TYPE", PBmmIndexedContainerType.class).
         put("P_BMM_PACKAGE", PBmmPackage.class).
         put("P_BMM_PROPERTY", PBmmProperty.class).
         put("P_BMM_SCHEMA", PBmmSchema.class).

bmm/src/test/java/org/openehr/bmm/v2/persistence/converters/BmmParseRoundtripTest.java

@@ -24,6 +24,14 @@ public void parseTestBmmRoundTrip() throws Exception{
          parseRoundTrip("/testbmm/TestBmm1.bmm");
     }
 
+    @Test
+    public void parseS2BmmRoundTrip() throws Exception{
+        parseRoundTrip("/s2/s2_base_070.bmm");
+        parseRoundTrip("/s2/s2_base_data_types_070.bmm");
+        parseRoundTrip("/s2/s2_base_resource_070.bmm");
+        parseRoundTrip("/s2/s2_care_ehr_065.bmm");
+        parseRoundTrip("/s2/s2_care_entry_065.bmm");
+    }
     @Test
     public void parseOpenEHRRoundTrip() throws Exception{
         parseRoundTrip("/openehr/openehr_basic_types_102.bmm");
@@ -32,6 +40,7 @@ public void parseOpenEHRRoundTrip() throws Exception{
         parseRoundTrip("/openehr/openehr_primitive_types_102.bmm");
         parseRoundTrip("/openehr/openehr_rm_102.bmm");
         parseRoundTrip("/openehr/openehr_structures_102.bmm");
+        parseRoundTrip("/openehr/openehr_base_110.bmm");
     }
 
     public void parseRoundTrip(String name) throws Exception {