Fix arpack solver #538
Workflow file for this run
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| name: arpack-ng | |
| on: [push, pull_request] | |
| jobs: | |
| ubuntu_latest_cmake: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Update OS | |
| run: sudo apt-get update | |
| - name: Install apt-get dependencies | |
| run: sudo apt-get install -y gfortran gcc g++ openmpi-bin libopenmpi-dev libblas-dev liblapack-dev libeigen3-dev cmake | |
| - name: Run job | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake -DEXAMPLES=ON -DMPI=ON -DICB=ON -DEIGEN=ON .. | |
| make all | |
| CTEST_OUTPUT_ON_FAILURE=1 make test | |
| make package_source | |
| ubuntu_latest_cmake_install: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Update OS | |
| run: sudo apt-get update | |
| - name: Install apt-get dependencies | |
| run: sudo apt-get install -y gfortran gcc g++ openmpi-bin libopenmpi-dev libblas-dev liblapack-dev libeigen3-dev cmake | |
| - name: Run job | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. | |
| bash ./tstCMakeInstall.sh | |
| bash ./tstCMakeInstall.sh 64- | |
| bash ./tstCMakeInstall.sh -ILP64 | |
| bash ./tstCMakeInstall.sh 64-ILP64 | |
| ubuntu_latest_autotools: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Update OS | |
| run: sudo apt-get update | |
| - name: Install apt-get dependencies | |
| run: sudo apt-get install -y gfortran gcc g++ openmpi-bin libopenmpi-dev libblas-dev liblapack-dev libeigen3-dev automake autoconf pkg-config libtool | |
| - name: Run job | |
| run: | | |
| ./bootstrap | |
| ./configure --enable-mpi --enable-icb --enable-eigen | |
| make all | |
| make check | |
| make distcheck | |
| ubuntu_latest_autotools_install: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Update OS | |
| run: sudo apt-get update | |
| - name: Install apt-get dependencies | |
| run: sudo apt-get install -y gfortran gcc g++ openmpi-bin libopenmpi-dev libblas-dev liblapack-dev libeigen3-dev automake autoconf pkg-config libtool | |
| - name: Run job | |
| run: | | |
| ./bootstrap | |
| ./configure | |
| bash ./tstAutotoolsInstall.sh | |
| bash ./tstAutotoolsInstall.sh 64- | |
| bash ./tstAutotoolsInstall.sh -ILP64 | |
| bash ./tstAutotoolsInstall.sh 64-ILP64 | |
| ubuntu_latest_cmake_python: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Update OS | |
| run: sudo apt-get update | |
| - name: Install apt-get dependencies | |
| run: sudo apt-get install -y gfortran gcc g++ openmpi-bin libopenmpi-dev libblas-dev liblapack-dev cmake libeigen3-dev | |
| - name: Install python dependencies | |
| run: sudo apt-get -y install python3-minimal python3-pip python3-numpy | |
| - name: Build boost-python for python3 (not provided by apt-cache) | |
| run : | | |
| sudo apt-get -y install wget | |
| wget https://sourceforge.net/projects/boost/files/boost/1.79.0/boost_1_79_0.tar.gz | |
| tar -xf boost_1_79_0.tar.gz | |
| cd boost_1_79_0 | |
| ./bootstrap.sh --with-libraries=python --with-python=/usr/bin/python3 --with-toolset=gcc | |
| sudo ./b2 toolset=gcc install | |
| sudo apt-get install locate | |
| sudo updatedb | |
| - name: Run job | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake -DEXAMPLES=ON -DMPI=ON -DICB=ON -DEIGEN=ON -DPYTHON3=ON .. | |
| make all | |
| CTEST_OUTPUT_ON_FAILURE=1 make test | |
| ubuntu_latest_autotools_ilp64: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Update OS | |
| run: sudo apt-get update | |
| - name: Install apt-get dependencies | |
| run: sudo apt-get install -y gfortran gcc g++ openmpi-bin libopenmpi-dev libblas-dev liblapack-dev automake autoconf pkg-config libtool libeigen3-dev | |
| - name: Install Intel MKL (ILP64 blas/lapack) | |
| run: echo yes | sudo apt-get -y install intel-mkl libmkl-dev | |
| - name: Run job | |
| run: | | |
| ./bootstrap | |
| ./configure --enable-icb --with-blas=mkl_gf_ilp64 --with-lapack=mkl_gf_ilp64 | |
| make all | |
| make check | |
| env: | |
| FFLAGS: "-DMKL_ILP64 -I/usr/include/mkl" | |
| FCFLAGS: "-DMKL_ILP64 -I/usr/include/mkl" | |
| LIBS: "-Wl,--no-as-needed -L/usr/lib/x86_64-linux-gnu -lmkl_sequential -lmkl_core -lpthread -lm -ldl" | |
| INTERFACE64: "1" | |
| macos_latest_cmake: | |
| runs-on: macos-latest | |
| steps: | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Install brew dependencies | |
| run: | | |
| brew reinstall gcc # brings gfortran on path | |
| brew install cmake mpich eigen | |
| - name: Run job | |
| run: | | |
| mkdir -p build | |
| cd build | |
| export FC=mpif90 # Uses gfortran. | |
| export FFLAGS="-ff2c -fno-second-underscore" | |
| export CC=mpicc # Uses clang. | |
| export CFLAGS="-Qunused-arguments" | |
| export CXX=mpic++ # Uses clang++. | |
| export CXXFLAGS="-Qunused-arguments" | |
| cmake -DBLA_VENDOR=Apple -DEXAMPLES=ON -DICB=ON -DEIGEN=ON -DMPI=ON .. | |
| make all | |
| CTEST_OUTPUT_ON_FAILURE=1 make test | |
| macos_latest_cmake_python: | |
| runs-on: macos-latest | |
| steps: | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Install brew dependencies | |
| run: | | |
| # Unlink and re-link to prevent errors when github mac runner images | |
| # install python outside of brew, for example: | |
| # https://github.com/orgs/Homebrew/discussions/3895 | |
| # https://github.com/actions/setup-python/issues/577 | |
| # https://github.com/actions/runner-images/issues/6459 | |
| # https://github.com/actions/runner-images/issues/6507 | |
| # https://github.com/actions/runner-images/issues/2322 | |
| brew list -1 | grep python | while read formula; do brew unlink $formula; brew link --overwrite $formula; done | |
| brew reinstall gcc # brings gfortran on path | |
| brew install cmake eigen boost-python3 python3 numpy | |
| - name: Run job | |
| run: | | |
| mkdir -p build | |
| cd build | |
| export FC=gfortran | |
| export FFLAGS="-ff2c -fno-second-underscore" | |
| export CC=clang | |
| export CFLAGS="-Qunused-arguments" | |
| export CXX=clang++ | |
| export CXXFLAGS="-Qunused-arguments" | |
| cmake -DBLA_VENDOR=Apple -DEXAMPLES=ON -DICB=ON -DEIGEN=ON -DPYTHON3=ON .. | |
| make all | |
| CTEST_OUTPUT_ON_FAILURE=1 make test | |
| macos_latest_autotools: | |
| runs-on: macos-latest | |
| steps: | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Install brew dependencies | |
| run: | | |
| brew reinstall gcc # brings gfortran on path | |
| brew install autoconf automake libtool pkg-config mpich eigen | |
| - name: Run job | |
| run: | | |
| ./bootstrap | |
| LIBS="-framework Accelerate" FFLAGS="-ff2c -fno-second-underscore" FCFLAGS="-ff2c -fno-second-underscore" \ | |
| ./configure --enable-icb --enable-eigen --enable-mpi | |
| make all | |
| make check | |
| windows_latest_cmake: | |
| runs-on: windows-latest | |
| name: MinGW-w64 ${{ matrix.msystem }} INTERFACE64=${{ matrix.int64 }}/MPI=${{ matrix.mpi }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| msystem: [UCRT64, CLANG64] | |
| int64: [ON, OFF] | |
| mpi: [ON, OFF] | |
| exclude: | |
| - int64: ON | |
| mpi: ON | |
| defaults: | |
| run: | |
| # Use MSYS2 as default shell | |
| shell: msys2 {0} | |
| steps: | |
| - name: Install MSYS2 build environment | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| msystem: ${{ matrix.msystem }} | |
| install: >- | |
| base-devel | |
| git | |
| pacboy: >- | |
| cmake:p | |
| ninja:p | |
| cc:p | |
| fc:p | |
| eigen3:p | |
| - name: Install OpenBLAS and MS-MPI from MSYS2 | |
| run: | | |
| if [[ ${{ matrix.int64 }} != ON ]]; then | |
| pacboy -S openblas:p --noconfirm | |
| else | |
| pacboy -S openblas64:p --noconfirm | |
| fi | |
| if [[ ${{ matrix.mpi }} = ON ]]; then | |
| # This installs only the link library. | |
| # The actual library will be installed in the next step. | |
| pacboy -S msmpi:p --noconfirm | |
| fi | |
| - name: Install MS-MPI (for mpiexec) | |
| uses: mpi4py/setup-mpi@v1 | |
| - name: Clone and check out repository code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{github.event.pull_request.head.ref}} # Branch where changes are implemented. | |
| repository: ${{github.event.pull_request.head.repo.full_name}} # Repo where changes are implemented. | |
| - name: Check commit | |
| run: | | |
| git log -1 | |
| - name: Run job | |
| run: | | |
| mkdir -p build && cd build | |
| echo "::group::Configure" | |
| if [[ ${{ matrix.int64 }} == ON ]]; then | |
| _blas_lib_flag="-DBLAS_LIBRARIES=openblas_64" | |
| fi | |
| cmake \ | |
| -GNinja \ | |
| -DICB=ON \ | |
| -DEIGEN=ON \ | |
| -DEXAMPLES=ON \ | |
| -DMPI=${{ matrix.mpi }} \ | |
| -DINTERFACE64=${{ matrix.int64 }} \ | |
| ${_blas_lib_flag} \ | |
| .. | |
| echo "::endgroup::" | |
| echo "::group::Build" | |
| cmake --build . -v | |
| echo "::endgroup::" | |
| - name: Run tests | |
| id: run-ctest | |
| run: | | |
| if [[ ${{ matrix.mpi }} == ON ]]; then | |
| export PATH="/c/Program Files/Microsoft MPI/Bin":$PATH # add mpiexec to msys2 path | |
| fi | |
| export PATH="${GITHUB_WORKSPACE}/build":$PATH # add libarpack.dll to msys2 path for tests that run in different directory | |
| cd build | |
| ctest | |
| - name: Re-run tests | |
| if: always() && (steps.run-ctest.outcome == 'failure') | |
| timeout-minutes: 60 | |
| run: | | |
| if [[ ${{ matrix.mpi }} == ON ]]; then | |
| export PATH="/c/Program Files/Microsoft MPI/Bin":$PATH # add mpiexec to msys2 path | |
| fi | |
| export PATH="${GITHUB_WORKSPACE}/build":$PATH # add libarpack.dll to msys2 path for tests that run in different directory | |
| cd build | |
| echo "::group::Re-run ctest" | |
| ctest --rerun-failed --output-on-failure || true | |
| echo "::endgroup::" | |
| echo "::group::Log from these tests" | |
| [ ! -f Testing/Temporary/LastTest.log ] || cat Testing/Temporary/LastTest.log | |
| echo "::endgroup::" | |
| echo "::group::Content of arpackmm.run.log" | |
| [ ! -f EXAMPLES/MATRIX_MARKET/arpackmm.run.log ] || cat EXAMPLES/MATRIX_MARKET/arpackmm.run.log | |
| echo "::endgroup::" |