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Assorted documentation fixes (installation, FAQ, molecules.py, conf.py) #976

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merged 8 commits into from
Jun 10, 2021

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Yoshanuikabundi
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We have rendering errors littered throughout our documentation. This PR is a start at going through the docs one at a time until we've got them all.

Highlights in this PR:

  • All the questions in the FAQ are now questions

  • The list of methods in the API docs now only renders once per class. Previously, it rendered once before the __init__() docs and repeated itself after.

  • installation.rst is now installation.md

  • conf.py has had black run on it

  • Tag issue being addressed

  • Add tests

  • Update docstrings/documentation, if applicable

  • Lint codebase

  • Update changelog

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codecov bot commented Jun 9, 2021

Codecov Report

Merging #976 (23c36e5) into master (741d51e) will not change coverage.
The diff coverage is n/a.

@mattwthompson
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Would this be a good PR to fix #970 and #962?

@@ -5999,7 +6013,7 @@ def add_bond_charge_virtual_site(self, atoms, distance, **kwargs):

Create a bond charge-type virtual site, in which the location of the
charge is specified by the position of two atoms. This supports
placement of a virtual site S along a vector between two specified
placement of a virtual site $S$ along a vector between two specified
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@j-wags j-wags Jun 10, 2021

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This $S$ renders verbatim as written

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@j-wags j-wags left a comment

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I've spot checked a bit and this looks great. Thanks @Yoshanuikabundi. I just commented on one place where the math doesn't seem to be rendering properly, other than that it should be good to go!

@Yoshanuikabundi Yoshanuikabundi merged commit b2b76bb into master Jun 10, 2021
@Yoshanuikabundi Yoshanuikabundi deleted the fine-toothed-comb branch June 10, 2021 07:57
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3 participants