fix: update gwas catalog sample files

update gwas catalog sample files to fix study_index tests
opentargets · Mar 6, 2024 · 20a4022 · 20a4022
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diff --git a/tests/gentropy/data_samples/gwas_catalog_ancestries_sample_v1.0.3-r2022-11-29.tsv b/tests/gentropy/data_samples/gwas_catalog_ancestries_sample_v1.0.3-r2022-11-29.tsv
@@ -1,4 +1,4 @@
-STUDY ACCESSION	PUBMED ID	FIRST AUTHOR	DATE	INITIAL SAMPLE DESCRIPTION	REPLICATION SAMPLE DESCRIPTION	STAGE	NUMBER OF INDIVIDUALS	BROAD ANCESTRAL CATEGORY	COUNTRY OF ORIGIN	COUNTRY OF RECRUITMENT	ADDITIONAL ANCESTRY DESCRIPTION	ANCESTRY DESCRIPTOR	FOUNDER/GENETICALLY ISOLATED POPULATION	NUMBER OF CASES	NUMBER OF CONTROLS	SAMPLE DESCRIPTION	COHORT(S)	COHORT-SPECIFIC REFERENCE
+STUDY ACCESSION	PUBMED ID	FIRST AUTHOR	DATE	INITIAL SAMPLE DESCRIPTION	REPLICATION SAMPLE DESCRIPTION	STAGE	NUMBER OF INDIVIDUALS	BROAD ANCESTRAL CATEGORY	COUNTRY OF ORIGIN	COUNTRY OF RECRUITMENT	ADDITIONAL ANCESTRY DESCRIPTION	ANCESTRY DESCRIPTOR	FOUNDER/GENETICALLY ISOLATED POPULATION	NUMBER OF CASES	NUMBER OF CONTROLS	SAMPLE DESCRIPTION
 GCST008644	26546613	Gutierrez-Achury J	2016-01-01	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	initial	32475	NR	NR	U.S., Netherlands, U.K.
 GCST008644	26546613	Gutierrez-Achury J	2016-01-01	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	initial	13329	European	NR	Sweden, Poland, Italy, Spain
 GCST008644	26546613	Gutierrez-Achury J	2016-01-01	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	initial	880	South Asian	NR	India