[Platform] Add GWAS credible sets widget to variant page

apps/platform/src/pages/VariantPage/Profile.tsx

@@ -9,19 +9,22 @@ import {
 import InSilicoPredictorsSummary from "sections/src/variant/InSilicoPredictors/Summary";
 import EVASummary from "sections/src/variant/EVA/Summary";
 import UniProtVariantsSummary from "sections/src/variant/UniProtVariants/Summary";
+import GWASCredibleSetsSummary from "sections/src/variant/GWASCredibleSets/Summary";
 import PharmacogenomicsSummary from "sections/src/variant/Pharmacogenomics/Summary";
 
 import ProfileHeader from "./ProfileHeader";
 
 const InSilicoPredictorsSection = lazy(() => import("sections/src/variant/InSilicoPredictors/Body"));
 const EVASection = lazy(() => import("sections/src/variant/EVA/Body"));
 const UniProtVariantsSection = lazy(() => import("sections/src/variant/UniProtVariants/Body"));
+const GWASCredibleSetsSection = lazy(() => import("sections/src/variant/GWASCredibleSets/Body"));
 const PharmacogenomicsSection = lazy(() => import("sections/src/variant/Pharmacogenomics/Body"));
 
 const summaries = [
   InSilicoPredictorsSummary,
   EVASummary,
   UniProtVariantsSummary,
+  GWASCredibleSetsSummary,
   PharmacogenomicsSummary,
 ];
 
@@ -51,6 +54,7 @@ function Profile({ varId }: ProfileProps) {
         <InSilicoPredictorsSummary />
         <EVASummary />
         <UniProtVariantsSummary />
+        <GWASCredibleSetsSummary />
         <PharmacogenomicsSummary />
       </SummaryContainer>
 
@@ -65,6 +69,7 @@ function Profile({ varId }: ProfileProps) {
           <UniProtVariantsSection id={varId} label='NO-LABEL!' entity={VARIANT} />
         </Suspense>
         <Suspense fallback={<SectionLoader />}>
+          <GWASCredibleSetsSection id={varId} label='NO-LABEL!' entity={VARIANT} />
           <PharmacogenomicsSection id={varId} label='NO-LABEL!' entity={VARIANT} />
         </Suspense>
         {/* NEED ANYTHING IN <PrivateWrapper> ???? see evidence page */}

apps/platform/src/pages/VariantPage/types.ts

@@ -94,6 +94,49 @@ export type UniProtVariantsType = {
   "target.approvedSymbol": string,
   "disease.id": string,
   "disease.name": string,
+};  
+
+// ==================
+// GWAS Credible Sets
+// ==================
+
+export type GWASCredibleSets = {
+  variantId: string,
+  study: {
+    id: string,
+    traitFromSource: string,
+    disease: {
+      id: string,
+      name: string,
+    }
+  },
+  pValueMantissa: number,
+  pValueExponent: number,
+  beta: number,
+  ldPopulationStructure: [
+    {
+      ldPopulation: string,
+      relativeSampleSize: number,
+    }
+  ],
+  finemappingMethod: string,
+  l2g: {
+    score: string,
+    target: {
+      id: string,
+      approvedSymbol: string,
+    }
+  },
+  locus: [
+    {
+      variantId: string,
+      r2Overall: number,
+      posteriorProbability: number,
+      standardError: number,
+      is95CredibleSet: boolean,
+      is99CredibleSet: boolean,
+    }
+  ]
 };
 
 // ================