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[Platform] Add allele frequency plot to variant page metadata section #403

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merged 7 commits into from
Jul 3, 2024

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@gjmcn gjmcn commented Jun 27, 2024

Description

Add allele frequency plot to variant page metadata section.

Issue: #3318

Type of change

  • New feature (non-breaking change which adds functionality)

How Has This Been Tested?

Checked in dev.

Checklist:

  • I have commented my code, particularly in hard-to-understand areas
  • I have made corresponding changes to the documentation
  • My changes generate no new warnings
  • Any dependent changes have been merged and published in downstream modules

@carcruz carcruz merged commit 0a27b93 into ot-variant-page Jul 3, 2024
11 checks passed
@carcruz carcruz deleted the gm-variant-top branch July 3, 2024 13:06
carcruz added a commit that referenced this pull request Jul 22, 2024
* [Platform] Add Profile and ProfileHeader to variant page (#376)

* [Platform]: variant page widgets init (#380)

* draft pharmacokinetics widget (#383)

* move reported protein link to description (#381)

* [Platform] Add GWAS credible sets widget to variant page (#390)

* [Platform] Add QTL credible sets widget to variant page (#396)

* [Platform] Add Uniprot id to Uniprot description link (#401)

* [Platform] Add allele frequency plot to variant page metadata section (#403)

* frequency vis examples

* polish plots

* allele frequency bars

* use flex for allele frequency plot

* do not import grid

* [Platform] Clean up variant page sections and summaries (#404)

* [Platform] Update variant page QTL credible sets widget (#406)

* [Platform] Use API for variant page header (#412)

* [Platform] Correct dbXref link in variant page header (#414)

* [Platform] Fix clinvar dbXref (#417)

* [Platform] Use API for metadata in variant page (#420)
carcruz added a commit that referenced this pull request Jul 29, 2024
* [Platform] Add Profile and ProfileHeader to variant page (#376)

* [Platform]: variant page widgets init (#380)

* draft pharmacokinetics widget (#383)

* move reported protein link to description (#381)

* [Platform] Add GWAS credible sets widget to variant page (#390)

* [Platform] Add QTL credible sets widget to variant page (#396)

* [Platform] Add Uniprot id to Uniprot description link (#401)

* [Platform] Add allele frequency plot to variant page metadata section (#403)

* [Platform] Clean up variant page sections and summaries (#404)

* [Platform] Update variant page QTL credible sets widget (#406)

* [Platform] Use API for variant page header (#412)

* [Platform] Correct dbXref link in variant page header (#414)

* [Platform] Fix clinvar dbXref (#417)

* [Platform] Use API for metadata in variant page (#420)

* [Platform] Use API data for in silico predictors widget on variant page (#424)


Co-authored-by: Carlos Cruz <me@carcruzcast.com>

* [Platform] Minor improvements to variant page insilico predictors widget (#429)

* [Platform] Add VEP widget to variant page (#428)
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2 participants