Implement a few fixes (#490) #1359
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| --- | |
| name: main | |
| # Automatically cancel a previous run. | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - '*' | |
| jobs: | |
| run-tests-linux: | |
| name: Run tests for ${{ matrix.os }} on ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-latest | |
| python-version: | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| - '3.12' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: create build environment | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-file: ./.envs/testenv-linux.yml | |
| environment-name: estimagic | |
| cache-env: true | |
| extra-specs: | | |
| python=${{ matrix.python-version }} | |
| - name: run pytest | |
| shell: bash -l {0} | |
| run: | | |
| micromamba activate estimagic | |
| pytest --cov-report=xml --cov=./ | |
| - name: Upload coverage report. | |
| if: runner.os == 'Linux' && matrix.python-version == '3.10' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| run-tests-win-and-mac: | |
| name: Run tests for ${{ matrix.os }} on ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - macos-latest | |
| - windows-latest | |
| python-version: | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: create build environment | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-file: ./.envs/testenv-others.yml | |
| environment-name: estimagic | |
| cache-env: true | |
| extra-specs: | | |
| python=${{ matrix.python-version }} | |
| - name: run pytest | |
| shell: bash -l {0} | |
| run: | | |
| micromamba activate estimagic | |
| pytest -m "not slow and not jax" | |
| run-tests-with-old-pandas: | |
| # This job is only for testing if estimagic works with older pandas versions, as | |
| # many pandas functions we use will be deprecated in pandas 3. estimagic's behavior | |
| # for older verions is handled in src/estimagic/compat.py. | |
| name: Run tests for ${{ matrix.os}} on ${{ matrix.python-version }} with pandas 1 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-latest | |
| python-version: | |
| - '3.11' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: create build environment | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-file: ./.envs/testenv-pandas.yml | |
| environment-name: estimagic | |
| cache-env: true | |
| extra-specs: | | |
| python=${{ matrix.python-version }} | |
| - name: run pytest | |
| shell: bash -l {0} | |
| run: | | |
| micromamba activate estimagic | |
| pytest tests/visualization | |
| pytest tests/parameters | |
| pytest tests/inference | |
| code-in-docs: | |
| name: Run code snippets in documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: create build environment | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-file: ./.envs/testenv-linux.yml | |
| environment-name: estimagic | |
| cache-env: true | |
| extra-specs: python=3.10 | |
| - name: run sphinx | |
| shell: bash -l {0} | |
| run: |- | |
| micromamba activate estimagic | |
| cd docs/source | |
| python -m doctest -v how_to_guides/optimization/how_to_specify_constraints.md |