Add missing nodes to various places in InferenceSystem

InferenceSystem/README.md

@@ -176,7 +176,7 @@ docker build . -t live-inference-system -f ./Dockerfile
 
 Note: the config used in the Dockerfile is a Production config.
 
-TODO: fix. For now, you will have to manually create 5 different docker containers for the 7 hydrophone locations. Each time you will need to edit the Dockerfile and replace the config for each hydrophone location (OrcasoundLab, BushPoint, PortTownsend, Sunset Bay, Point Robinson, Mast Center, and North San Juan Center).
+TODO: fix. For now, you will have to manually create a different docker container for each hydrophone location. Each time you will need to edit the Dockerfile and replace the config for each hydrophone location.
 
 
 ## Running the docker container

InferenceSystem/demos/hls_reader.py

@@ -17,10 +17,14 @@
 import shutil
 import spectrogram_visualizer
 
+# TODO: get the list from https://live.orcasound.net/api/json/feeds
 ORCASOUND_STREAMS = {
-    # 'OrcasoundLab': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_orcasound_lab'
-    'BushPoint': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_bush_point'
-    # 'PortTownsend': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_port_townsend'
+    'BushPoint': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_bush_point',
+    'MaSTCenter': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_mast_center',
+    'NorthSanJuanChannel': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_north_sjc',
+    'OrcasoundLab': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_orcasound_lab',
+    'PointRobinson': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_point_robinson',
+    'PortTownsend': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_port_townsend',
     'SunsetBay': 'https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_sunset_bay'
 }
 
@@ -134,4 +138,4 @@ def download_hls_segment_and_predict(counter, stream_url, stream_name, wav_durat
     shutil.copy(wav_file_path, wav_player_path)
 
     spectrogram_visualizer.write_annotations_on_spectrogram(wav_player_path, clipname, result_json, spec_player_path)
-    return counter+1
+    return counter+1

InferenceSystem/src/LiveInferenceOrchestrator.py

@@ -33,15 +33,16 @@
 COSMOSDB_DATABASE_NAME = "predictions"
 COSMOSDB_CONTAINER_NAME = "metadata"
 
-ORCASOUND_LAB_LOCATION = {"id": "rpi_orcasound_lab", "name": "Haro Strait", "longitude":  -123.17357, "latitude": 48.55833}
-PORT_TOWNSEND_LOCATION = {"id": "rpi_port_townsend", "name": "Port Townsend", "longitude":  -122.76045, "latitude": 48.13569}
-BUSH_POINT_LOCATION = {"id": "rpi_bush_point", "name": "Bush Point", "longitude":  -122.6039, "latitude": 48.03371}
-SUNSET_BAY_LOCATION = {"id": "rpi_sunset_bay", "name": "Sunset Bay", "longitude":  -122.3339, "latitude": 47.86497}
-POINT_ROBINSON_LOCATION = {"id": "rpi_point_robinson", "name": "Point Robinson", "longitude":  -122.37267, "latitude": 47.38838}
+# TODO: get this data from https://live.orcasound.net/api/json/feeds
+BUSH_POINT_LOCATION = {"id": "rpi_bush_point", "name": "Bush Point", "longitude":  -122.6040035, "latitude": 48.0336664}
 MAST_CENTER_LOCATION = {"id": "rpi_mast_center", "name": "Mast Center", "longitude":  -122.32512, "latitude": 47.34922}
-NORTH_SJC_LOCATION = {"id": "rpi_north_sjc", "name": "North SJC", "longitude":  -123.058779, "latitude": 48.591294}
+NORTH_SAN_JUAN_CHANNEL_LOCATION = {"id": "rpi_north_sjc", "name": "North San Juan Channel", "longitude":  -123.058779, "latitude": 48.591294}
+ORCASOUND_LAB_LOCATION = {"id": "rpi_orcasound_lab", "name": "Orcasound Lab", "longitude":  -123.1735774, "latitude": 48.5583362}
+POINT_ROBINSON_LOCATION = {"id": "rpi_point_robinson", "name": "Point Robinson", "longitude":  -122.37267, "latitude": 47.388383}
+PORT_TOWNSEND_LOCATION = {"id": "rpi_port_townsend", "name": "Port Townsend", "longitude":  -122.760614, "latitude": 48.135743}
+SUNSET_BAY_LOCATION = {"id": "rpi_sunset_bay", "name": "Sunset Bay", "longitude":  -122.33393605795372, "latitude": 47.86497296593844}
 
-source_guid_to_location = {"rpi_orcasound_lab" : ORCASOUND_LAB_LOCATION, "rpi_port_townsend" : PORT_TOWNSEND_LOCATION, "rpi_bush_point": BUSH_POINT_LOCATION, "rpi_sunset_bay": SUNSET_BAY_LOCATION, "rpi_point_robinson": POINT_ROBINSON_LOCATION, "rpi_mast_center": MAST_CENTER_LOCATION, "rpi_north_sjc": NORTH_SJC_LOCATION}
+source_guid_to_location = {"rpi_bush_point": BUSH_POINT_LOCATION, "rpi_mast_center": MAST_CENTER_LOCATION, "rpi_north_sjc": NORTH_SAN_JUAN_CHANNEL_LOCATION, "rpi_orcasound_lab" : ORCASOUND_LAB_LOCATION, "rpi_point_robinson": POINT_ROBINSON_LOCATION, "rpi_port_townsend" : PORT_TOWNSEND_LOCATION, "rpi_sunset_bay": SUNSET_BAY_LOCATION}
 
 def assemble_blob_uri(container_name, item_name):
 

InferenceSystem/src/PrepareDataForPredictionExplorer.py

@@ -203,8 +203,9 @@ def main():
         help="Start time in PST in following format 2020-07-25 19:15")
     parser.add_argument("--end_time", type=str, required=True, \
         help="End time in PST in following format 2020-07-25 20:15")
+    # TODO: get list of streams from https://live.orcasound.net/api/json/feeds instead of hard coding it
     parser.add_argument("--s3_stream", type=str, required=True, \
-        help="Hydrophone stream (orcasound_lab/port_townsend/bush_point)")
+        help="Hydrophone stream (bush_point/mast_center/north_sjc/orcasound_lab/point_robinson/port_townsend/sunset_bay)")
     parser.add_argument("--model_path", type=str, required=True, \
         help="Path to the model folder that contains weights and mean, invstd")
     parser.add_argument("--annotation_threshold", type=float, required=True, \

InferenceSystem/src/globals.py

@@ -1,13 +1,13 @@
 import datetime
 
 S3_STREAM_URLS = {
+    "bush_point": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_bush_point",
+    "mast_center": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_mast_center",
+    "north_sjc": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_north_sjc",
     "orcasound_lab": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_orcasound_lab",
+    "point_robinson": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_point_robinson",
     "port_townsend": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_port_townsend",
-    "bush_point": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_bush_point",
     "sunset_bay": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_sunset_bay",
-    "point_robinson": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_point_robinson",
-    "mast_center": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_mast_center",
-    "north_sjc": "https://s3-us-west-2.amazonaws.com/audio-orcasound-net/rpi_north_sjc"
 }
 
 # Limits time window (end - start) of negative samples to be downloaded for retraining

InferenceSystem/src/model/datautils.py

@@ -173,6 +173,7 @@ def download_hls_segment(stream_urls,tmp_root,output_root):
 
 
 def test_hls_download():
+    # These URLs are only two of a longer list.
     make_osl_url = lambda x: "https://s3-us-west-2.amazonaws.com/streaming-orcasound-net/rpi_orcasound_lab/hls/{}/live.m3u8".format(x)
 
     make_bush_url = lambda x: "https://s3-us-west-2.amazonaws.com/streaming-orcasound-net/rpi_bush_point/hls/{}/live.m3u8".format(x)