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    32 repositories

    • Igor_scripts

      Public
      Repository for the standard Baden lab OS scripts
      IGOR Pro
      •1•0•1•0•Updated Oct 23, 2024Oct 23, 2024

    • Opsin-tunings

      Public
      Python
      •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

    • retina-hub

      Public
      Retina hub is a user driver repository to store and classify papers in the retina field.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 12, 2024May 12, 2024

    • Nature_Comms_Paper_23

      Public
      Code for the paper "Birds multiplex spectral and temporal visual information via retinal On- and Off-channels"
      MATLAB
      •0•0•0•0•Updated Jul 13, 2023Jul 13, 2023

    • Jupyter_MEA

      Public
      Contains scripts for the MEA data analysis using Jupyter Notebook
      Python
      •0•1•0•0•Updated Feb 6, 2023Feb 6, 2023

    • retinapy

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

    • know-how

      Public
      Gitbook with lab information that tends to get lost over generations
      SCSS
      •
      MIT License
      •0•1•0•5•Updated Jan 4, 2023Jan 4, 2023

    • poorlabs_stimulus_generator

      Public
      A custom driver for Chrolis LED system from ThorLabs
      C++
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 21, 2022Oct 21, 2022

    • Openspritzer

      Public
      An open hardware pressure ejection system for reliably delivering picolitre volumes.
      injectionneuroscienceopen-scienceopen-science-hardwareopen-harwaredrug-injectionsprtizerprecisiondiy-opensource-microinjector
      OpenSCAD
      •
      GNU General Public License v3.0
      •7•19•3•0•Updated Oct 13, 2022Oct 13, 2022

    • twoPanalysis

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Aug 4, 2022Aug 4, 2022

    • QDSpy-scripts

      Public
      Shared folders for QDSpy scripts
      Python
      •0•0•0•0•Updated Jul 15, 2022Jul 15, 2022

    • darkchick-sadchick

      Public
      Light sensor to detec circadian rythm failures
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 9, 2022May 9, 2022

    • Spikeling

      Public
      A hardware implementation of the Izhikevich model of a spiking neuron
      C++
      •
      MIT License
      •8•12•1•0•Updated Feb 15, 2022Feb 15, 2022

    • nTCscope

      Public
      Repository for nTC
      MATLAB
      •
      MIT License
      •1•2•1•0•Updated Dec 7, 2021Dec 7, 2021

    • Lab-software-index

      Public
      Collection of software used in the lab, as well as FOSS and free alternatives to commonly used software
      0•0•0•0•Updated Dec 3, 2021Dec 3, 2021

    • LED-Zappelin

      Public
      An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording
      open-hardwareopen-scienceopen-science-hardwarestimulating-ledscolour-visionoptogenetics-stimulation
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •8•25•0•0•Updated Nov 8, 2021Nov 8, 2021

    • Hyperspectral-scanner

      Public
      C++
      •
      GNU General Public License v3.0
      •6•18•2•1•Updated Nov 6, 2021Nov 6, 2021

    • AfricanNeuroscience

      Public
      Data on African neuroscience publications 1996- 2017 as part of MB Maina et al. 2020
      2•0•0•0•Updated Jun 15, 2021Jun 15, 2021

    • Thunderdome

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated May 21, 2021May 21, 2021

    • MEA_analysis_GUI

      Public
      Contains all files for the Matlab GUI to analyse MEA data + spatial stimulator
      MATLAB
      •
      BSD 2-Clause "Simplified" License
      •1•0•9•0•Updated Feb 22, 2021Feb 22, 2021

    • Free_to_use_vector_graphics

      Public
      Collection of lab-made vector graphics CC BY 4.0
      0•4•0•0•Updated May 26, 2020May 26, 2020

    • face-protectors

      Public
      Documentation for the face protectors built for the local hospital during COVID-19
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 24, 2020Apr 24, 2020

    • Open-Visual-Stimulator

      Public
      An arbitrary-spectrum spatial visual stimulator for vision research
      open-hardwareneuroscienceopen-scienceopen-science-hardwarelightcrafterstimulating-ledscolour-vision
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Mar 11, 2020Mar 11, 2020

    • HyperspectralStimulator

      Public
      Hardware description and software (Arduino and Python) for the hyperspectral stimulator.
      Jupyter Notebook
      •0•3•1•0•Updated Nov 6, 2019Nov 6, 2019

    • Micromanipulator

      Public
      Micro for 3rd year project
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 15, 2019Oct 15, 2019

    • 3rd_year_project

      Public
      In this repository you can see progression of the project
      C++
      •
      MIT License
      •1•0•0•0•Updated Oct 9, 2019Oct 9, 2019

    • equipment_repository_template

      Public template
      This is a template repository. should be used as a guideline by people/groups developing equipment in this project
      GNU General Public License v3.0
      •8•0•0•0•Updated Aug 22, 2019Aug 22, 2019

    • 3Dprinting_and_electronics

      Public
      3D printed models & DIY electronics for the lab
      C++
      •
      GNU General Public License v3.0
      •5•5•0•2•Updated Jul 29, 2019Jul 29, 2019

    • MEA_Matlab_Arduino

      Public
      This repository contains Matlab scripts for the analysis of sorted spikes (using the HS2 spike sorting) recorded with the MEA
      0•0•0•0•Updated Jul 1, 2019Jul 1, 2019

    • behavioural-stimulator

      Public
      electronics, optics and other bits for a behavioural stimulator
      OpenSCAD
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 17, 2018Aug 17, 2018