Repositories list

• aurora-pkpd

  Public
  Open Python Web App for Pharmcological Modeling and Analysis

  pharmacometricsnoncompartmental-analysispharmacokinetics+ 3pharmacodynamicscompartmental-modelspkpd

  Python

  •

  BSD 2-Clause "Simplified" License

  •0•0•11•0•Updated Oct 25, 2024Oct 25, 2024

• radioligand-therapy-model

  Public
  Semi-mechanistic PK/PD model of radioligand therapy implemented in PySB with pysb-pkpd and pysb-units.

  nuclear-medicinepkpdcancer-models+ 5pkpd-modellingpysb-modelingradioligand-therapypysb-unitspysb-pkpd

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• pysb-pkpd

  Public
  PySB add-on providing domain-specific macros and models for empirical and mechanistic PK/PD modeling.

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •4•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• pysb-units

  Public
  PySB add-on providing utilities to add units to models and perform dimensional analysis.

  systems-biologypysbphysics-based-simulation+ 4pkpd-modellingmechanistic-modelingreaction-modelspysb-modeling

  Python

  •

  BSD 2-Clause "Simplified" License

  •0•1•1•0•Updated Jul 29, 2024Jul 29, 2024

• GAlibrate

  Public
  Parameter estimation and model calibration using Genetic Algorithm optimization in Python.

  Jupyter Notebook

  •

  MIT License

  •3•0•0•0•Updated Jul 25, 2024Jul 25, 2024

• pharmacodynamic-response-models

  Public
  Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.

  Python

  •

  MIT License

  •2•0•0•0•Updated Jul 22, 2024Jul 22, 2024

• .github

  Public
  0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

• pyNCA

  Public
  Non-compartmental PK analysis in Python

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

• pysb-jlsimulator

  Public
  Julia-based simulator(s) for PySB models using tools like Catalyst.jl and PyJulia.

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jun 23, 2024Jun 23, 2024

• pysb-fit

  Public
  Tools to help automate PySB model calibration using a style similar to scikit-learn models.

  BSD 2-Clause "Simplified" License

  •0•0•1•0•Updated Jun 23, 2024Jun 23, 2024

• aurora-biomodeling-app

  Public
  Python-based web app for biomodel construction, simulation, and analysis.

  MIT License

  •0•0•0•0•Updated Mar 19, 2024Mar 19, 2024

• PySB-Models

  Public
  A repository of mathematical models of biological systems that are encoded using PySB.

  MIT License

  •1•0•0•0•Updated Jun 7, 2023Jun 7, 2023