Center for Biomedical Image Computing & Analytics (CBICA)

All

68 repositories

NiChart_Project
Public
Neuro Imaging Chart of AI-based Imaging Biomarkers
Python
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Other
•5•13•6•1•Updated Nov 14, 2024Nov 14, 2024
DLWMLS
Public
Python
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Other
•0•0•1•0•Updated Nov 14, 2024Nov 14, 2024
NiChart_DLMUSE
Public
Python
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Other
•4•3•5•1•Updated Nov 14, 2024Nov 14, 2024
DLICV
Public
A repository that allows users to apply the DLICV method to their brain imaging data.
deeplearning medical-image-processing medical-image-analysis imagesegmentation nnunet
Python
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Other
•0•1•0•1•Updated Nov 9, 2024Nov 9, 2024
DLMUSE
Public
A repository that allows users to apply the DLMUSE method to their brain imaging data.
Python
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Other
•0•3•0•1•Updated Nov 9, 2024Nov 9, 2024
spare_score
Public
Compute SPARE scores to detect characteristic feature patterns
Python
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Other
•6•2•0•1•Updated Nov 6, 2024Nov 6, 2024
slurm_billing_report
Public
Prints out usage and charge for given Slurm account and time period.
Go
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GNU General Public License v3.0
•2•0•0•0•Updated Sep 21, 2024Sep 21, 2024
MRISnapshot
Public
A QC tool for verification of datasets with MRI images and derived masks
Python
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MIT License
•1•4•0•0•Updated Sep 12, 2024Sep 12, 2024
NiChart_Viewer
Public
Visualization tool for Neuroimaging Chart (NiChart) imaging descriptors and biomarkers
nichart
Python
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Other
•0•1•0•0•Updated Sep 10, 2024Sep 10, 2024
NiChart_Workflows
Public
HTML
•3•1•1•1•Updated Aug 22, 2024Aug 22, 2024
SurrealGAN
Public
Python
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MIT License
•10•0•0•0•Updated Jul 19, 2024Jul 19, 2024
NiChart_Website
Public
The Landing page for the NiChart project
visualization machine-learning image-processing neuroimaging neuroimaging-analysis
JavaScript
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Other
•3•1•0•0•Updated May 25, 2024May 25, 2024
NiChart_Harmonize
Public
Statistical harmonization package in NiChart
nichart
Python
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MIT License
•0•1•0•0•Updated May 24, 2024May 24, 2024
TIP
Public
Translational Imaging Pipelines
Python
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Other
•3•0•2•0•Updated Feb 7, 2024Feb 7, 2024
NiChart_Tissue_Segmentation
Public
Brain tissue segmentation using FSL FAST and DLICV
Python
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Other
•0•2•0•0•Updated Feb 2, 2024Feb 2, 2024
niCHART
Public
The neuro-imaging brain aging chart [niCHART] is a comprehensive solution to analyze standard structural and functional brain MRI data across studies. [niCHART] and the associated pre-processing tools implement computational morphometry, functional signal analysis, quality control, statistical harmonization, data standardization, interactive visual
mri neuroimaging aging
Python
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Other
•8•13•17•6•Updated Jan 22, 2024Jan 22, 2024
BRIDGEPORT
Public
Source for https://www.cbica.upenn.edu/bridgeport and documentation of the GWAS dataset
JavaScript
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Other
•0•0•0•0•Updated Jan 3, 2024Jan 3, 2024
BrainMaGe
Public
Brain extraction in presence of abnormalities, using single and multiple MRI modalities
python machine-learning deep-learning pytorch neuroimaging segmentation nih brain-extraction skull-stripping pytorch-lightning
Python
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Other
•7•32•2•4•Updated Dec 9, 2023Dec 9, 2023
CaPTk
Public
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
cpp cancer cpp11 cancer-imaging-research medical-image-computing cwl itcr radiomics medical-image-processing nih
C++
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Other
•64•181•162•10•Updated Dec 9, 2023Dec 9, 2023
GBMSurvival_2023
Public
MATLAB
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Other
•1•2•0•0•Updated Nov 20, 2023Nov 20, 2023
DeepMRSeg-Models
Public
1•1•0•0•Updated Sep 8, 2023Sep 8, 2023
RESPOND
Public
Shell
•2•0•1•0•Updated Sep 6, 2023Sep 6, 2023
FigureGenerator
Public
This helps creating high quality figures for use in manuscripts and presentations.
screenshots medical-imaging figure-maker figures screenshot-generator
Python
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Other
•2•11•2•0•Updated Jul 11, 2023Jul 11, 2023
gandlf_experiments_template
Public template
Python
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Apache License 2.0
•0•0•0•0•Updated May 17, 2023May 17, 2023
Deep-LIBRA
Public
Python
•4•11•6•0•Updated Apr 25, 2023Apr 25, 2023
DeepMRSeg
Public
Python
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Other
•7•7•5•0•Updated Apr 3, 2023Apr 3, 2023
BrainSegmenter
Public
Shell
•3•0•0•0•Updated Mar 13, 2023Mar 13, 2023
cbica.github.io
Public
HTML
•1•0•0•0•Updated Mar 7, 2023Mar 7, 2023
OPM
Public archive
OpenSlide Patch Manager
extractor patch patch-generation histopathology patch-extraction
Python
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BSD 3-Clause "New" or "Revised" License
•6•4•1•2•Updated Feb 15, 2023Feb 15, 2023
MICO
Public
C++
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Other
•0•1•0•0•Updated Jan 16, 2023Jan 16, 2023