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@DiseaseOntology Disease Ontology

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    9 repositories

    • HumanDiseaseOntology

      Public
      Repository for the Human Disease Ontology.
      diseaseobofoundryontology
      Makefile
      •
      Creative Commons Zero v1.0 Universal
      •108•347•64•1•Updated Nov 15, 2024Nov 15, 2024

    • SPARQLqueries

      Public
      SPARQL queries for the DO-KB SPARQL sandbox and endpoint
      sparqlsparql-querydisease-ontology
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • DO.utils

      Public
      R package for improvement and analysis of the Human Disease Ontology (DO), including semi-automated use assessment from published literature.
      r
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•2•17•0•Updated Nov 6, 2024Nov 6, 2024

    • SymptomOntology

      Public
      The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance reported by a patient indicative of a disease”. Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it…
      ontologydiseasesignobofoundrysymptom
      Web Ontology Language
      •
      Creative Commons Zero v1.0 Universal
      •15•36•5•0•Updated May 22, 2024May 22, 2024

    • DiseaseDriversOntology

      Public
      Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in collaboration with EnvO, ExO, ECTO and ChEBI.
      diseaseobofoundryontology
      Creative Commons Zero v1.0 Universal
      •0•3•0•0•Updated Apr 18, 2024Apr 18, 2024

    • PathogenTransmissionOntology

      Public
      The Pathogen Transmission Ontology describes the transmission methods of human disease pathogens from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.
      pathogendiseaseobofoundrypathogen-transmission-ontologyontology
      Creative Commons Zero v1.0 Universal
      •3•8•0•0•Updated Dec 18, 2023Dec 18, 2023

    • OWLFlattener

      Public
      OWL Utility to flatten the hierarchical axioms down from ancestors to children
      Java
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Sep 13, 2023Sep 13, 2023

    • assessing_DO_use

      Public
      The code, data, and figures used or produced in the case study with the Human Disease Ontology for "Assessing Resource Use: A Case Study with the Human Disease Ontology" (DATABASE).
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•2•0•Updated Apr 18, 2023Apr 18, 2023

    • ANMODS

      Public
      Animal Models of Human Diseases
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Sep 24, 2021Sep 24, 2021