Repositories list

• chipdip-pipeline

  Public
  Pipeline to process sequencing reads from a ChIP-DIP experiment

  Python

  •

  MIT License

  •2•2•9•0•Updated Oct 18, 2024Oct 18, 2024

• CLAPAnalysis

  Public
  Pipeline for CLAP data analysis

  Python

  •2•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• speckle

  Public
  scripts and data from Bhat et al. speckle paper

  Jupyter Notebook

  •1•0•0•0•Updated Nov 20, 2023Nov 20, 2023

• guttmanlab-core

  Public
  Java

  •3•0•13•0•Updated May 6, 2023May 6, 2023

• sprite2.0-pipeline

  Public
  Python

  •3•8•2•0•Updated Aug 28, 2022Aug 28, 2022

• sprite-pipeline

  Public
  A self-contained repository of all code needed for SPRITE analysis

  C

  •

  MIT License

  •4•20•2•0•Updated Jul 28, 2021Jul 28, 2021

• array-tools

  Public
  Programs used for array design

  Java

  •0•0•0•0•Updated Sep 22, 2017Sep 22, 2017

• alignment-tools

  Public
  Non-project-specific tools for processing alignment data.

  Java

  •

  MIT License

  •1•0•0•0•Updated Aug 7, 2017Aug 7, 2017

• barcoding-post

  Public
  Programs for processing data after barcode-identification

  Python

  •1•1•0•0•Updated Aug 4, 2017Aug 4, 2017

• bio

  Public
  Java

  •0•0•0•0•Updated Aug 3, 2017Aug 3, 2017

• variant

  Public
  Code for variant calling.

  Java

  •0•0•0•0•Updated Jul 12, 2017Jul 12, 2017

• scripts

  Public
  Common location for general scripts

  Python

  •0•0•0•0•Updated Mar 9, 2017Mar 9, 2017

• malat1

  Public
  Repository for code associated with Malat1 projects

  Java

  •0•0•0•0•Updated Mar 7, 2017Mar 7, 2017

• guttmanlab-sequential-barcode

  Public
  Packages to manage and analyze data generated by the Guttman lab's sequential barcoding method.

  Java

  •0•0•0•0•Updated Sep 23, 2016Sep 23, 2016

• guttmanlab-capture

  Public
  Tools to plan hybrid capture experiments, arrays

  Java

  •2•0•0•0•Updated Aug 31, 2016Aug 31, 2016

• galaxy-tools

  Public
  Custom

  0•0•0•0•Updated Apr 15, 2016Apr 15, 2016

• gbtools

  Public
  Java

  •0•0•0•0•Updated Apr 13, 2016Apr 13, 2016

• guttmanlab-editing

  Public
  Packages to develop experiments and analyze data for genome editing methods

  Java

  •0•0•0•0•Updated Apr 13, 2016Apr 13, 2016

• htsjdk

  Public
  A Java API for high-throughput sequencing data (HTS) formats.

  Java

  •243•0•0•0•Updated Mar 14, 2016Mar 14, 2016

• picard

  Public
  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Java

  •368•0•0•0•Updated Mar 2, 2016Mar 2, 2016