Imaging Data Commons

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59 repositories

slim
Public
Interoperable web-based slide microscopy viewer and annotation tool
react oidc dicomweb digital-pathology idc-viewers
TypeScript
•
Apache License 2.0
•37•120•65•7•Updated Nov 5, 2024Nov 5, 2024
IDC-WebApp
Public
Web Application front end for IDC (CORE REPO)
core-repo
JavaScript
•
Apache License 2.0
•9•6•122•0•Updated Nov 5, 2024Nov 5, 2024
idc-viewers-sandbox-gha-testing
Public
MIT License
•0•0•0•0•Updated Nov 4, 2024Nov 4, 2024
ohif-gcp-extension
Public
TypeScript
•
MIT License
•0•0•1•0•Updated Nov 4, 2024Nov 4, 2024
dicom-microscopy-viewer
Public
Web-based DICOM slide microscopy viewer library
javascript npm dicom openlayers dicomweb dicom-json idc-viewers
JavaScript
•
MIT License
•35•100•8•4•Updated Nov 4, 2024Nov 4, 2024
github_analytics
Public
Scripts for monitoring and archival of GitHub insights for IDC-related repositories
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•1•0•0•0•Updated Nov 3, 2024Nov 3, 2024
highdicom
Public
High-level DICOM abstractions for the Python programming language
numpy dicom python3 pydicom typehints
Python
•
MIT License
•37•177•25•7•Updated Nov 2, 2024Nov 2, 2024
idc-index
Public
Python package to simplify access to the data available from NCI Imaging Data Commons
Python
•
MIT License
•5•11•17•1•Updated Nov 1, 2024Nov 1, 2024
idc-slim
Public
Interoperable slide microscopy viewer for thin clients (CORE REPO)
core-repo idc-viewers
TypeScript
•
Apache License 2.0
•0•0•1•1•Updated Nov 1, 2024Nov 1, 2024
IDC-Common
Public
Shared code between repositories (CORE REPO)
core-repo
Python
•
Apache License 2.0
•4•0•0•0•Updated Oct 31, 2024Oct 31, 2024
ViewersV3
Public
OHIF zero-footprint DICOM viewer tracking V3 (CORE REPO)
core-repo idc-viewers
TypeScript
•
MIT License
•3.4k•0•3•0•Updated Oct 30, 2024Oct 30, 2024
IDC-Tutorials
Public
Self-guided notebook tutorials to help get started with using IDC
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•14•28•13•4•Updated Oct 30, 2024Oct 30, 2024
Viewers
Public
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages (CORE REPO)
core-repo idc-viewers
JavaScript
•
MIT License
•3.4k•2•4•1•Updated Oct 29, 2024Oct 29, 2024
idc-wsi-conversion
Public
(CORE REPO)
core-repo
Shell
•
Other
•0•8•1•0•Updated Oct 27, 2024Oct 27, 2024
ThrottleProxy
Public
(CORE REPO)
core-repo
Python
•
Apache License 2.0
•0•2•4•0•Updated Oct 25, 2024Oct 25, 2024
ohif-gcp-mode
Public
OHIF GCP Mode
JavaScript
•
MIT License
•0•0•0•0•Updated Oct 25, 2024Oct 25, 2024
etl_flow
Public
(CORE REPO)
core-repo
Python
•
Apache License 2.0
•3•4•3•0•Updated Oct 24, 2024Oct 24, 2024
aws_etl
Public
Code to transfer IDC image files from Google Cloud Storage to AWS S3 (CORE REPO)
core-repo
Python
•
Apache License 2.0
•0•0•1•1•Updated Oct 23, 2024Oct 23, 2024
dicomweb-client
Public
Python client for DICOMweb RESTful services
numpy dicom python3 pytest python-requests dicomweb pydicom typehints
Python
•
MIT License
•38•110•15•4•Updated Oct 22, 2024Oct 22, 2024
idc-index-data
Public
Python package providing the index to query and download data hosted by the NCI Imaging Data Commons
Python
•
MIT License
•4•1•2•0•Updated Oct 18, 2024Oct 18, 2024
idc-sm-annotations-conversion
Public
conversion dicom pathomics
Python
•
MIT License
•0•0•0•0•Updated Oct 17, 2024Oct 17, 2024
libdicom
Public
C library for reading DICOM files
c dicom medical-imaging
C
•
MIT License
•8•17•3•0•Updated Oct 15, 2024Oct 15, 2024
dcmqi-python-distributions
Public
Python
•
MIT License
•1•1•0•1•Updated Oct 14, 2024Oct 14, 2024
IDC-Docs
Public
Source for IDC documentation
BSD 3-Clause "New" or "Revised" License
•2•4•7•1•Updated Oct 9, 2024Oct 9, 2024
CloudSegmentator
Public
Medical imaging segmentation workflows for FireCloud (Terra) and Seven Bridges Cancer Genomics Cloud
Jupyter Notebook
•
Apache License 2.0
•2•3•4•0•Updated Sep 26, 2024Sep 26, 2024
SlicerIDCBrowser
Public
A 3D Slicer extension to support access to the content of NCI Imaging Data Commons
3d-slicer-extension
Python
•
BSD 3-Clause "New" or "Revised" License
•5•5•12•1•Updated Sep 24, 2024Sep 24, 2024
idc-prostate-mri-analysis
Public
Jupyter Notebook
•
Apache License 2.0
•2•4•0•0•Updated Sep 16, 2024Sep 16, 2024
IDC-API
Public
Google Endpoints API providing programmatic access (CORE REPO)
core-repo
Python
•
Apache License 2.0
•3•0•3•0•Updated Sep 4, 2024Sep 4, 2024
pyplastimatch
Public
Python wrapper for Plastimatch.
python dicom-images medical-image-processing
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•4•11•2•0•Updated Aug 27, 2024Aug 27, 2024
Mhubai-IDC
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Aug 15, 2024Aug 15, 2024