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@ImagingDataCommons

Imaging Data Commons

README.md

Welcome to the official GitHub organization for the Imaging Data Commons!

About IDC

The National Cancer Institute Imaging Data Commons (IDC) is a cloud-based repository of publicly available cancer imaging data, co-located with analysis and exploration tools. As part of the NCI Cancer Research Data Commons (CRDC), IDC provides researchers with:

  • Access to >85 TB of cancer imaging data, including radiology, brightfield, and fluorescence microscopy images
  • Image-derived data such as annotations, segmentations, and quantitative measurements
  • Accompanying clinical data
  • Cloud-based infrastructure for data exploration and analysis

Key Features

  • Free and open access: No registration or access requests required
  • Commercial-friendly licensing: >95% of data covered by CC-BY license
  • Cloud-based: Data available from both Google and AWS public buckets
  • Standardized data: All images and derived data harmonized into DICOM format

Repositories

Our GitHub organization hosts various repositories to support IDC users:

  • IDC-Tutorials: Self-guided notebook tutorials to help you get started with IDC
  • idc-index: python package for searching, downloading, and simplifying access to the data in IDC
  • SlicerIDCBrowser: 3D Slicer extension providing access to IDC data

We are also maintianing a number of repositories containing popular tools that we use in IDC, but which are of general utility:

  • highdicom: high-level DICOM abstractions for the Python programming language
  • Slim: interoperable web-based DICOM slide microscopy viewer and annotation tool
  • dicom-microscopy-viewer: Web-based DICOM slide microscopy viewer library
  • dicomweb-client: python client for DICOMweb RESTful services
  • libdicom: C library for reading DICOM files
  • s5cmd-python-distributions: package that allows you to install s5cmd command line tools with pip

Getting Started

To begin using IDC:

Support

If you need assistance or have questions, please:

  • Open a new topic in the IDC User Forum (preferred)
  • Send us a message at support at canceridc dot dev

We're excited to support your cancer imaging research with IDC!

Pinned Loading

  1. IDC-Tutorials IDC-Tutorials Public

    Self-guided notebook tutorials to help get started with using IDC

    Jupyter Notebook 28 15

  2. idc-index idc-index Public

    Python package to simplify access to the data available from NCI Imaging Data Commons

    Python 11 6

  3. highdicom highdicom Public

    High-level DICOM abstractions for the Python programming language

    Python 181 37

  4. dicomweb-client dicomweb-client Public

    Python client for DICOMweb RESTful services

    Python 112 38

  5. slim slim Public

    Interoperable web-based DICOM slide microscopy viewer and annotation tool

    TypeScript 125 39

  6. SlicerIDCBrowser SlicerIDCBrowser Public

    A 3D Slicer extension to support access to the content of NCI Imaging Data Commons

    Python 5 5

Repositories

Showing 10 of 60 repositories
  • highdicom Public

    High-level DICOM abstractions for the Python programming language

    ImagingDataCommons/highdicom’s past year of commit activity
    Python 181 MIT 37 25 (1 issue needs help) 7 Updated Dec 24, 2024
  • github_analytics Public

    Scripts for monitoring and archival of GitHub insights for IDC-related repositories

    ImagingDataCommons/github_analytics’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Dec 23, 2024
  • IDC-WebApp Public Forked from isb-cgc/ISB-CGC-Webapp

    Web Application front end for IDC (CORE REPO)

    ImagingDataCommons/IDC-WebApp’s past year of commit activity
    JavaScript 6 Apache-2.0 9 123 0 Updated Dec 21, 2024
  • IDC-Docs Public

    Source for IDC documentation

    ImagingDataCommons/IDC-Docs’s past year of commit activity
    5 BSD-3-Clause 2 7 1 Updated Dec 20, 2024
  • idc-comppath-reproducibility Public

    Classification of lung tumor slide images with the NCI Imaging Data Commons

    ImagingDataCommons/idc-comppath-reproducibility’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 0 0 Updated Dec 20, 2024
  • libdicom Public

    C library for reading DICOM files

    ImagingDataCommons/libdicom’s past year of commit activity
    C 17 MIT 8 2 0 Updated Dec 20, 2024
  • Viewers Public Forked from OHIF/Viewers

    OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages (CORE REPO)

    ImagingDataCommons/Viewers’s past year of commit activity
    JavaScript 2 MIT 3,463 4 1 Updated Dec 20, 2024
  • .github Public
    ImagingDataCommons/.github’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 19, 2024
  • IDC-Common Public Forked from isb-cgc/ISB-CGC-Common

    Shared code between repositories (CORE REPO)

    ImagingDataCommons/IDC-Common’s past year of commit activity
    Python 0 Apache-2.0 4 0 0 Updated Dec 18, 2024
  • dicom-microscopy-viewer Public

    Web-based DICOM slide microscopy viewer library

    ImagingDataCommons/dicom-microscopy-viewer’s past year of commit activity
    JavaScript 103 MIT 37 8 3 Updated Dec 16, 2024
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