Laboratory for Systems and Synthetic Immunology at ETH based in Basel

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13 repositories

TouCAN
Public
PureBasic
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MIT License
•1•2•1•0•Updated Dec 11, 2024Dec 11, 2024
plmfit
Public
PLMFit platform for TL on PLMs
ai pytorch transfer-learning plm fine-tuning protein-engineering pytorch-lightning downstream-tasks deepspeed protein-language-models
Python
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MIT License
•0•3•6•1•Updated Dec 10, 2024Dec 10, 2024
sc_AbSpecificity_pred
Public
Repository for ICLR Workshop publication. Code for Antigen specificity predictions of OVA and RBD single cell sequencing datasets.
Jupyter Notebook
•0•0•0•0•Updated Aug 28, 2024Aug 28, 2024
meta-learning-for-protein-engineering
Public
Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023.12.003)
Python
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MIT License
•3•19•0•0•Updated Aug 8, 2024Aug 8, 2024
synthetic-coevolution
Public
Synthetic coevolution reveals adaptive mutational trajectories of neutralizing antibodies and SARS-CoV-2
Python
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MIT License
•1•1•0•0•Updated Apr 2, 2024Apr 2, 2024
Omicron_DML
Public
Code repo associated with the Frei_Gao_2023 manuscript
Python
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MIT License
•0•2•0•0•Updated Feb 20, 2024Feb 20, 2024
Kapetanovic_2024
Public
0•0•0•0•Updated Mar 16, 2023Mar 16, 2023
SpeedingCARs_2022
Public
R
•1•2•0•0•Updated Sep 27, 2022Sep 27, 2022
TIL_scRNA_profiling_lung_cancer_Bieberich
Public
Single cell analysis of TILs from lung cancer
R
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MIT License
•0•0•0•0•Updated Sep 13, 2022Sep 13, 2022
Taft_Weber_2021
Public
Python
•3•4•2•0•Updated Sep 7, 2022Sep 7, 2022
Vazquez-Lombardi_2022
Public
R
•1•0•1•0•Updated Aug 18, 2022Aug 18, 2022
Ehling_Covid_2021
Public
R
•0•1•0•0•Updated Dec 14, 2021Dec 14, 2021
scSeq_convalescentCovid
Public
Custom code for data analysis from "A single-cell atlas of lymphocyte adaptive immune repertoires and transcriptomes reveals age-related differences in convalescent COVID-19 patients"
0•1•0•0•Updated Nov 19, 2021Nov 19, 2021