Repositories list

• linguaPhylo

  Public
  LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models

  reproducibilityprobabilistic-modelsbeast2+ 2phylogenetic-analysisrevbayes

  Java

  •

  GNU Lesser General Public License v3.0

  •7•20•86•3•Updated Dec 6, 2024Dec 6, 2024

• LPhyBeast

  Public
  Convert LPhy scripts to BEAST 2 XML

  Java

  •

  GNU Lesser General Public License v2.1

  •1•3•31•0•Updated Nov 25, 2024Nov 25, 2024

• linguaPhylo.github.io

  Public
  LinguaPhylo website including tutorials and posts.

  HTML

  •1•3•1•0•Updated Nov 1, 2024Nov 1, 2024

• PopFunc

  Public
  Population functions

  Java

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• LPhyBeastTest

  Public
  LPhyBeast + BEAST2 tests for tutorials

  Java

  •

  GNU General Public License v3.0

  •2•2•0•0•Updated Oct 29, 2024Oct 29, 2024

• LPhyBeastExt

  Public
  The BEAST 2 package extended from the core project LPhyBeast

  Java

  •

  GNU Lesser General Public License v2.1

  •0•2•1•0•Updated Sep 10, 2024Sep 10, 2024

• jebl3

  Public
  Java Evolutionary Biology Library using the Java module system.

  Java

  •

  GNU Lesser General Public License v3.0

  •6•0•0•0•Updated Feb 26, 2024Feb 26, 2024

• LPhyB2

  Public
  The LPhy extension to import beast2 core

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Feb 25, 2024Feb 25, 2024

• LPhyRevPy

  Public
  Convert LPhy models to RevBayes script

  Python

  •0•0•0•0•Updated Nov 22, 2023Nov 22, 2023

• GradlePlugins

  Public
  Define lphy extension conventions and share the build logic

  Kotlin

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Feb 17, 2022Feb 17, 2022

• supplementary

  Public
  to keep the supplementary materials, especially large files

  R

  •0•0•0•0•Updated Nov 11, 2021Nov 11, 2021

• beast-outercore

  Public
  The outercore package of BEAST 2

  Java

  •

  GNU Lesser General Public License v2.1

  •0•0•1•0•Updated Jul 14, 2021Jul 14, 2021

• HelloLPhy

  Public
  The template to guide how to create a LPhy/LPhyBEAST extension

  0•0•0•0•Updated Jul 14, 2021Jul 14, 2021

• linguaPhyloDSL

  Public
  An attempt to produce a compiler and interpreter for the LPhy language using Xtext

  Java

  •0•0•0•0•Updated May 25, 2021May 25, 2021

• LinguaPhyloMPS

  Public
  An attempt to write a LPhy language parser with IntelliJ MPS

  Java

  •0•0•0•0•Updated Mar 30, 2021Mar 30, 2021

• LPhyScripter

  Public
  A GUI user interface for generating LPhy scripts without writing any LPhy code

  Java

  •0•0•0•0•Updated Mar 8, 2021Mar 8, 2021