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@OHDSI Observational Health Data Sciences and Informatics

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    306 repositories

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •0•0•10•0•Updated Oct 17, 2024Oct 17, 2024

    • circe-be

      Public
      CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5
      cohort-definitions
      Java
      •
      Apache License 2.0
      •13•9•8•5•Updated Oct 17, 2024Oct 17, 2024

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•2•23•1•Updated Oct 17, 2024Oct 17, 2024

    • OmopViewer

      Public
      R
      •
      Apache License 2.0
      •0•1•16•1•Updated Oct 17, 2024Oct 17, 2024

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •5•12•41•2•Updated Oct 17, 2024Oct 17, 2024

    • Themis

      Public
      Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data generation or quality certification, and debates.
      Apache License 2.0
      •8•27•52•1•Updated Oct 17, 2024Oct 17, 2024

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•2•1•Updated Oct 17, 2024Oct 17, 2024

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•34•2•Updated Oct 17, 2024Oct 17, 2024

    • FeatureExtraction

      Public
      An R package for generating features (covariates) for a cohort using data in the Common Data Model.
      hades
      R
      •58•60•41•7•Updated Oct 17, 2024Oct 17, 2024

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •88•187•64•3•Updated Oct 17, 2024Oct 17, 2024

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •15•14•1•4•Updated Oct 17, 2024Oct 17, 2024

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•19•4•Updated Oct 17, 2024Oct 17, 2024

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•219•216•20•Updated Oct 16, 2024Oct 16, 2024

    • phenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•1•8•0•Updated Oct 16, 2024Oct 16, 2024

    • Tutorial-ETL

      Public
      Course materials for OHDSI ETL tutorial
      Apache License 2.0
      •16•45•2•0•Updated Oct 16, 2024Oct 16, 2024

    • CommonDataModel

      Public
      Definition and DDLs for the OMOP Common Data Model (CDM)
      HTML
      •450•882•87•12•Updated Oct 15, 2024Oct 15, 2024

    • HealthSystems

      Public
      [Under development] Health Systems Interest Group
      PLpgSQL
      •
      Apache License 2.0
      •0•0•1•0•Updated Oct 15, 2024Oct 15, 2024

    • omock

      Public
      R
      •
      Apache License 2.0
      •1•2•4•0•Updated Oct 15, 2024Oct 15, 2024

    • ArachneUI

      Public
      Network infrastructure for collaborative studies across disparate data nodes and researches
      SCSS
      •6•14•1•6•Updated Oct 15, 2024Oct 15, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •136•269•215•16•Updated Oct 15, 2024Oct 15, 2024

    • SqlRender

      Public
      This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
      hades
      R
      •
      Other
      •77•81•8•0•Updated Oct 14, 2024Oct 14, 2024

    • ArachneUIComponents

      Public
      [under development] a open repository to host ARACHNE Common UI components
      JavaScript
      •
      Apache License 2.0
      •1•2•0•20•Updated Oct 14, 2024Oct 14, 2024

    • webapi-component-geospatial

      Public
      Java
      •
      Apache License 2.0
      •0•1•3•8•Updated Oct 14, 2024Oct 14, 2024

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •4•11•14•3•Updated Oct 13, 2024Oct 13, 2024

    • Athena

      Public
      Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
      Java
      •19•58•53•10•Updated Oct 13, 2024Oct 13, 2024

    • ArachneCommons

      Public
      Commons module contains common code re-used between all Arachne components
      Java
      •8•3•1•9•Updated Oct 12, 2024Oct 12, 2024

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •166•129•134•22•Updated Oct 11, 2024Oct 11, 2024

    • OhdsiShinyModules

      Public
      An R package containing Shiny modules used by various OHDSI Shiny apps
      R
      •11•8•52•5•Updated Oct 11, 2024Oct 11, 2024

    • EmpiricalCalibration

      Public
      An R package for performing empirical calibration of observational study estimates
      hades
      R
      •9•10•2•0•Updated Oct 11, 2024Oct 11, 2024

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      hades
      R
      •80•54•28•0•Updated Oct 11, 2024Oct 11, 2024