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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 882 450

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 219 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 269 136

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 38 32

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 82 57

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    HTML 187 88

Repositories

Showing 10 of 306 repositories
  • OmopViewer Public
    OHDSI/OmopViewer’s past year of commit activity
    R 1 Apache-2.0 0 16 1 Updated Oct 17, 2024
  • Ares Public

    A Research Exploration System

    OHDSI/Ares’s past year of commit activity
    Vue 12 Apache-2.0 5 41 2 Updated Oct 17, 2024
  • OmopSketch Public
    OHDSI/OmopSketch’s past year of commit activity
    R 2 Apache-2.0 0 22 (2 issues need help) 0 Updated Oct 17, 2024
  • Themis Public

    Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data generation or quality certification, and debates.

    OHDSI/Themis’s past year of commit activity
    27 Apache-2.0 8 52 1 Updated Oct 17, 2024
  • ArachneExecutionEngine Public

    Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI

    OHDSI/ArachneExecutionEngine’s past year of commit activity
    PLpgSQL 8 8 2 1 Updated Oct 17, 2024
  • CohortConstructor Public
    OHDSI/CohortConstructor’s past year of commit activity
    R 1 Apache-2.0 0 35 2 Updated Oct 17, 2024
  • FeatureExtraction Public

    An R package for generating features (covariates) for a cohort using data in the Common Data Model.

    OHDSI/FeatureExtraction’s past year of commit activity
    R 60 58 41 (3 issues need help) 7 Updated Oct 17, 2024
  • PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    OHDSI/PatientLevelPrediction’s past year of commit activity
    HTML 187 88 64 (3 issues need help) 3 Updated Oct 17, 2024
  • ETL-LambdaBuilder Public

    CDM Builder leveraging AWS Lambda

    OHDSI/ETL-LambdaBuilder’s past year of commit activity
    C# 14 Apache-2.0 15 1 4 Updated Oct 17, 2024
  • Arachne Public

    Arachne Data Node web application

    OHDSI/Arachne’s past year of commit activity
    TypeScript 1 Apache-2.0 1 19 4 Updated Oct 17, 2024
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