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    11 repositories

    • pixelator

      Public
      A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
      spatialproteinproteomicssingle-cellsingle-cell-omicsmolecular-pixelationpixelgen-technologies
      Python
      •
      MIT License
      •2•14•1•1•Updated Dec 20, 2024Dec 20, 2024

    • nf-core-pixelator

      Public
      Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
      Nextflow
      •
      MIT License
      •3•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • pixelatorR

      Public
      Library for analysis of Molecular Pixelation data in R (Pixelgen Technologies AB)
      R
      •
      GNU General Public License v2.0
      •0•7•0•1•Updated Dec 9, 2024Dec 9, 2024

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • test-datasets

      Public
      Test data to be used for automated testing with the nf-core pipelines
      MIT License
      •361•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • adjusted-local-assortativity-paper

      Public
      Analysis code for the paper "Using Adjusted Local Assortativity with Molecular Pixelation unveils colocalization of membrane proteins with immunological significance"
      graph-theorysingle-cellspatial-proteomicstopological-data-analysismolecular-pixelationlocal-assortativityuropod-formation
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Jul 4, 2024Jul 4, 2024

    • pixelgen-MPX-paper

      Public
      Analysis code for the "Molecular Pixelation: Single-cell spatial proteomics by sequencing" paper
      R
      •
      GNU General Public License v2.0
      •0•2•0•0•Updated Feb 19, 2024Feb 19, 2024

    • libpysal

      Public
      Core components of Python Spatial Analysis Library
      Python
      •
      Other
      •79•0•0•0•Updated Oct 19, 2023Oct 19, 2023

    • tools

      Public
      Python package with helper tools for the nf-core community.
      Python
      •
      MIT License
      •192•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • pysal

      Public
      PySAL: Python Spatial Analysis Library Meta-Package
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •302•0•0•0•Updated Oct 5, 2023Oct 5, 2023

    • scanpy

      Public
      Single-cell analysis in Python. Scales to >1M cells.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •607•0•0•0•Updated Sep 15, 2022Sep 15, 2022